Pseudoalteromonas sp. KAN5: KAN5_08470
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Entry
KAN5_08470 CDS
T10721
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pska Pseudoalteromonas sp. KAN5
Pathway
pska03030
DNA replication
pska03430
Mismatch repair
pska03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pska00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KAN5_08470 (holB)
03430 Mismatch repair
KAN5_08470 (holB)
03440 Homologous recombination
KAN5_08470 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pska03032
]
KAN5_08470 (holB)
03400 DNA repair and recombination proteins [BR:
pska03400
]
KAN5_08470 (holB)
Enzymes [BR:
pska01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KAN5_08470 (holB)
DNA replication proteins [BR:
pska03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KAN5_08470 (holB)
DNA repair and recombination proteins [BR:
pska03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KAN5_08470 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AAA_16
AAA_5
TacA1
DUF1040
SRP54
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
BDF94009
LinkDB
All DBs
Position
989521..990417
Genome browser
AA seq
298 aa
AA seq
DB search
MIYPWLNDVHQQLTASFNAGRFHHGQLFNGQQGVGKHALVEELANALLCSAPQNLVACGH
CKSCHLNQAVTHPDKYTVQTDGQSIGVDDIRSVSDFMQQSAAQNANKVVVINDCHKMTTA
AANALLKTLEEPSPQRFLLLTTNATAQLPATILSRCALSEVKVHNTEVAMQWIAQLNVPA
YPWLKLFTQQPLLVARWQQDEQLEVIDQLYKFATELKQGHNFSALVDIISKDNERIRVFS
LFLSEQLKQQLITGMDFDSYQNAQNALAEFVQNSTQILGLNLPLAVSRLAYRLRNSHK
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgatttatccttggcttaacgatgttcatcagcagctcaccgccagttttaatgctggg
cgttttcatcatgggcagttgtttaatggccagcaaggtgtcggtaagcacgccttagtt
gaggaattagccaatgctttattgtgtagcgcgccgcaaaatctagtcgcgtgtggacat
tgtaaaagctgtcacttaaaccaagcggtgactcatccagataaatatacagtgcaaacc
gatgggcaaagtattggtgttgacgatatacgcagcgtgagtgattttatgcagcaatca
gcagcgcaaaatgccaataaagtggtggtgatcaatgattgccacaaaatgaccacggct
gctgcaaatgcactgttaaaaaccttagaagagccaagtcctcagcgatttttattgcta
accaccaatgcgacagcacaattgcctgcgacaattttaagccgttgtgcgctcagtgaa
gttaaagttcataatactgaagtggcaatgcagtggatcgcacaattaaacgtccctgcg
tatccatggttaaaattgtttactcagcaaccattgctggtcgcgcgctggcagcaggat
gaacagcttgaagtgattgatcaactttataaatttgcaactgagttaaaacaaggccat
aatttcagtgcgttagttgatattattagtaaagataacgaacgtattcgtgtatttagt
ttatttttaagcgagcaattaaaacaacaactgatcactggaatggactttgactcgtac
caaaatgcacaaaacgccttggcggagtttgtgcaaaacagtacccagatactcggattg
aatttgccattagcagtttcgcgtttagcgtatcgtttacgtaacagccataaatag
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