Pseudoalteromonas sp. KAN5: KAN5_19260
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Entry
KAN5_19260 CDS
T10721
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pska Pseudoalteromonas sp. KAN5
Brite
KEGG Orthology (KO) [BR:
pska00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pska03009
]
KAN5_19260 (rlmD)
Enzymes [BR:
pska01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KAN5_19260 (rlmD)
Ribosome biogenesis [BR:
pska03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KAN5_19260 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
RrnaAD
PCMT
PrmA
Methyltransf_15
Methyltransf_11
DOT1
Methyltransf_23
Methyltransf_4
DNA_methylase
TPMT
ATE_C
N6_N4_Mtase
AGA-YXIM_GBD
Motif
Other DBs
NCBI-ProteinID:
BDF95088
LinkDB
All DBs
Position
complement(2212371..2213696)
Genome browser
AA seq
441 aa
AA seq
DB search
MAQFFQAKKKTLSGQSLTLAVTGMDHQGRGIAKHNNKVCFVNGALTGETVKAKLIEDKAR
YSAAKTVKVEQASDARVKPFCEYYQQCGGCQLQHLRLDQQLVEKQLAVSQLFAKFAKLNT
LNWQDPLLSESTHYRRSARLAVMYDKTAKKMRVGYRAQGSKQIVSVQHCAVLSDAFSAIF
TVFDEVLNLHSELRSVSHLQLCQADEQNFVVIRHTKTISDKLKNTIEQLGLSHQWQIIWQ
GETQQIHHGHLPMPFYQLAELGLKFEFGLENFIQVNAQVNQAMLSQAVDWLNLSVKEQVL
DLFCGIGNFSLALAKYAKSVVGVEGVASAVAMATQNAQTNHIANAHFHCFDLTQNMQQAP
WFSTELDILVLDPSRTGAFAILEQLPLEQFKTILYVSCDPVTLARDSAIITQARFSLEKI
GLMNMFPHTGHIETMALFQRR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtttttccaagcaaaaaagaaaaccctttcagggcagtcgttaacgttggcc
gttaccggcatggatcatcaaggtcggggcattgctaaacacaataataaagtgtgtttt
gtgaatggggcacttacaggcgaaacggtgaaagccaaattaattgaagataaagcccgt
tatagtgctgctaaaacagtaaaagttgaacaagctagtgatgcgagagtaaaaccattt
tgtgagtactaccaacaatgtggaggctgccaactgcagcatttgcgtcttgatcaacaa
ttagtggaaaagcaattggcagtgagccaattgtttgccaagttcgcaaaacttaataca
ttgaactggcaagatccgttattgagcgagtcaacacattaccgccgcagtgcacgtttg
gcggtaatgtacgataaaactgcaaaaaaaatgcgtgttgggtatcgggcgcaaggctcc
aagcaaattgtcagtgtgcagcactgtgcggtactaagcgatgctttttcggctattttt
actgtttttgatgaggtattaaatctacatagcgagctgcgaagtgtgagtcatcttcaa
ttatgccaggcagacgaacaaaactttgtagttatacgccatactaaaaccatcagtgat
aaattaaaaaatacaattgagcaacttgggttgagtcatcaatggcagattatatggcag
ggggaaacccagcaaattcaccatggacatttacccatgccattttatcagttagctgag
cttggtttaaagtttgaatttggtttagaaaactttattcaggttaatgcgcaggttaat
caggccatgttatctcaagcagttgattggcttaacttaagtgtaaaggagcaagtactc
gatctattttgcggtatcggtaatttctcattagcgctggcaaagtacgcaaaaagtgtg
gttggggtcgaaggagtggcttctgcggttgcaatggcgacgcaaaatgcgcaaactaac
catatagccaacgctcattttcattgttttgatttaacacaaaacatgcagcaagcaccg
tggtttagtacagagttggatattttagtactcgatccatcacgtacaggtgcattcgct
attttagagcaactgcctcttgagcaatttaaaacgattttatatgtctcttgcgatcct
gtgactttagcccgtgacagtgcaattattacgcaagctagattttcacttgaaaaaatt
gggctaatgaatatgtttccgcatactgggcatattgaaacaatggcgttatttcaaagg
aggtag
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