Pseudoalteromonas sp. KAN5: KAN5_30430
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Entry
KAN5_30430 CDS
T10721
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pska Pseudoalteromonas sp. KAN5
Pathway
pska03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pska00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAN5_30430 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pska03019
]
KAN5_30430 (rhlB)
Enzymes [BR:
pska01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KAN5_30430 (rhlB)
Messenger RNA biogenesis [BR:
pska03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KAN5_30430 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDF96205
LinkDB
All DBs
Position
3488434..3489711
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AA seq
425 aa
AA seq
DB search
MTKTHLTDKKFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKT
LAFLTATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGED
YEKQRAQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMF
RRMPDTSQRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIEEELFHPSQEDK
VKLLLTLIEEEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFS
KGDLDFLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGKAISFACEQ
YAYNLHEIEEYIEHSIPLSHYDKSALLDDVTKPTIQRKRNYSTGPRSRSNNNGRRPNNSY
QKARS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttgaccgataaaaagttttcagactttgctattgcaccggaagtg
gttgccgggttaaccgaaagtgggtttgaatattgcacacccatacaagctaaatgccta
ccttttatttgtgatggccgcgatattgcgggtcaagcacaaacgggtacaggcaaaacg
ttggcgtttttaaccgccacgtgccatcggttattacaatctagcaaagcacctagtaaa
catccaagagccctgatcatggcccctactcgggagcttgcgattcagatccacaaagat
gcaaaaattttagcgccacactgtaatcttaacttaggtttagtatatggtggcgaagat
tacgaaaaacaacgtgcacagttagaaaaaggcgttgatattttaattggcaccacaggt
cgcttaatcgatttatataaacaagggtgttataccctcaatgaaatcgaagtagtggtc
cttgatgaagccgatcgtatgtttgatttgggttttattaaagatattcgttatatgttt
cgtcgtatgccggatacatcgcaacgacttaacttattattctccgccacattatcgtat
cgggtacaagagttggcgtttgagcacatgacaaatccagagcatgtgcaaattgagcca
gatgtaaaaactggcaaacgtattgaagaagaactatttcatccttcacaagaagataag
gttaagctgttattaaccttgattgaagaagaatggcctgaaaaagcgattgtgtttgca
aatactaagcatagctgcgaaacagtgtatgcctggttaaaagcggatggtcatcgtgtt
ggtatgcttactggcgacgttaaccagaaaaagcgtcaatcaattttagcgcaattcagc
aaaggtgatttagacttcttggtagcaacggatgtagcagcacgtggcttgcatatccct
gaagtaagtcatgtatttaacttcgacttaccagatgattgtgaagattacgttcatcga
atcggtcgtacaggtcgtgcaggcgcatctggtaaagcaattagttttgcatgtgagcag
tatgcatataaccttcatgaaattgaagaatacatagagcacagcatacctttatcgcat
tatgataaaagtgcattgcttgatgatgtaactaagcctactattcaaagaaaacgtaat
tattcaacaggcccgcgtagccgtagtaacaacaacggacgtagacccaataatagttac
caaaaagcacggtcgtag
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