Pseudoalteromonas sp. KAN5: KAN5_33430
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Entry
KAN5_33430 CDS
T10721
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pska Pseudoalteromonas sp. KAN5
Pathway
pska03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pska00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAN5_33430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pska03019
]
KAN5_33430
03400 DNA repair and recombination proteins [BR:
pska03400
]
KAN5_33430
Enzymes [BR:
pska01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KAN5_33430
Messenger RNA biogenesis [BR:
pska03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KAN5_33430
DNA repair and recombination proteins [BR:
pska03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KAN5_33430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BDF96505
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All DBs
Position
complement(3810179..3812011)
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AA seq
610 aa
AA seq
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MTAMNTPTPTPSTIVRSPAAILKQVFGYSEFRDGQETVINAALSGQDTLVLLPTGGGKSV
CYQVPALALSGLTVVISPLISLMQDQVSQLQALGVKAAYINNSLNRDEQQQIYQQLHSGL
IKLLYVAPEKILQHEFKERLGHLNISLFAIDEAHCVSHWGHDFRPHYCRLSELKLHFPHV
PMMALTATADKATRFDIVQQLGLQAPYIHTGSFDRPNIRYTIEEKFKPLAQLLRYLKEQQ
NQSGIIYCTSRKRVDEIAEKIADAGMNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVA
FGMGINKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDI
EDEQRRRVEEQRFNAMASFAEAQTCRRQILLNYFSEYQREPCGNCDICLNPPKSFDGTLV
AQQALSCVYRAEQRFGLGYIVELLRGANTSRIRDNNHHQLSTYGIGKDHSSEFWLSILRQ
LIHQGLLSQDITQGSALRLTEGARAIFKGEYALQMAEPRLQAKHVYQDKLAQFNYDKKLF
AKLRALRKELADADDVPPYVVFNDKTLAEMAQLMPTNDSEFLKVSGVGFTKLNKYGSPFL
HAIRNYLATS
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgatgaatacaccaacccccactccaagcaccattgtgcgcagtcccgccgct
atactcaaacaagtgtttggttatagtgaatttcgtgatggccaagaaacggtgatcaat
gcagccctcagtggccaagacaccctcgtgttattacccacaggcggtggcaaatcagta
tgctaccaagtgccggcactggccttgagtggccttaccgtggttatctcaccattgatc
tcactcatgcaagatcaagtgtcacaactccaagcgcttggagtaaaagcggcgtatatt
aacaatagcctgaaccgcgacgagcaacaacaaatataccaacaactacacagtggcttg
ataaaactactgtatgttgctccagaaaaaattctacaacacgaatttaaagaacgccta
ggtcaccttaatattagtttatttgcgattgatgaagcacattgtgtgtcgcattggggt
catgattttcgcccgcattattgtcgcctaagcgagcttaagctgcatttcccacacgtg
cctatgatggcactaactgctacagctgacaaagcaacgcggtttgatattgtgcaacag
ttaggtttacaagctccctatattcatactggcagttttgataggcctaatattcgttat
accatagaagaaaagttcaagccgctcgcacagctcttacgctatttaaaagaacaacaa
aatcaaagtggcatcatttattgcactagccgtaaacgcgttgatgaaatagctgaaaag
atagctgacgcaggaatgaatgctgcggcttaccatgctggcatgagtaacgagcaacgc
cagtttgtgcaaacaggttttgcccgtgatgatattcaaatcgtggttgccaccgtggcc
tttgggatgggtattaataagcccaatgtgcgatttgtactacattacgatattccaaaa
agtattgaatcttactatcaagaaacgggccgcgctgggcgtgatggccttgcggctgaa
gcaatcatgtactttgatcctgctgacattggtcgagtaagacgcttttttgaagacatt
gaagatgaacagcgtcgtcgcgtcgaagagcaacgatttaatgccatggccagctttgca
gaagcacaaacctgccgccgacaaatactgcttaactattttagtgaataccaacgagaa
ccgtgtggcaactgtgatatttgcttgaatccaccaaaaagctttgatggtactttagtt
gcccagcaagcactctcatgtgtgtaccgtgccgagcagcgttttggtttaggttacatt
gttgaattattacgcggggctaatactagccgcattcgtgataacaatcaccaccagcta
agcacctacggtatcggcaaagatcacagtagtgaattttggctgagtattttacgccaa
cttattcaccaaggattgctcagccaggatatcacccaaggttctgctctgcgtttaact
gaaggtgctcgtgcgatttttaaaggcgaatacgcactgcaaatggccgagccacgcttg
caggctaagcacgtttatcaagataaactggcccaatttaattatgataaaaagctcttt
gctaaactacgcgccctgcgcaaagaacttgctgatgctgatgatgtaccaccttatgtg
gtatttaacgataaaactcttgcagaaatggcacagttgatgccaaccaatgacagtgaa
tttctcaaagtttcaggagttggttttaccaaacttaacaaatacggcagcccatttttg
catgctattcgcaactatttagcgacttcctaa
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