Pseudomonas sp. KU43P: KU43P_04270
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Entry
KU43P_04270 CDS
T10397
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pskp Pseudomonas sp. KU43P
Pathway
pskp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KU43P_04270 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pskp03019
]
KU43P_04270 (rhlE)
Enzymes [BR:
pskp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KU43P_04270 (rhlE)
Messenger RNA biogenesis [BR:
pskp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KU43P_04270 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBH43950
LinkDB
All DBs
Position
complement(475568..477451)
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANAV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTKQKIADGDLMGFDASQVEAEKPEVRERPQNNGRGGRNQQARGEGGKDGSGGR
KDKGKDKGKAKPQAAEKSADKEKAGDKQQPRKPRDKKPRQQQASQASAPKAPADRDPEEF
LDDDVDNFGNRADYVSPYQNAKNQGRNRRPGGTAGAGQQGQGAGQRNNGGGQGRNGGQPR
NASGEKRPPRNNNGGGGRRDGGGRNRPAGRDDGLRQEPAVRSSREPQNQPVIIRKESKLD
RYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggcacttgtccgcgctatcgaagctgcgggc
tacacccagccgactccggtgcaacagcgggccattcccgccgtgttgcaaggccgtgac
ctgatggttgccgctcagactggtactggtaagaccggcggcttcgccctgccgattctc
gagcgcctgttcccagccggtcaccccgacaaatcccagcgccatggcccgcgccaaccg
cgtgtcctggtgctgacgccaacccgcgagctggcagcccaggtgcatgacagcttcaag
gtgtacgcccgtgacctgcccctggtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcagatccaggccatcgccaagggcgtcgacgttcttgtcgcgtgccctggccgcctg
ctcgacctggccggtcaaggcaaggtcgacctggcccatgtggaaatcctggtactggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtcctcgcccgc
ctgccggccaagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctggccgacaagctcctgcacaacccggagcgcatcgaagtcaccccgccgaacacgacg
gtcgagcgtatcgagcaacgcgtctatcgcctgcccgccagccacaagcgtgctctactg
gcgcacctgatcaccctgggtgcctgggagcaggtgctggtgttcactcgcaccaagcat
ggcgcaaaccgcctggccgagtacctggaaaagcacggcctgaccgccgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccaacgccgta
cgcgtgctggtcgccaccgacatcgccgcacgcgggctggatatcgaccaactgcctcac
gtggtcaacttcgagctgccgaacgtcgaggaagattacgttcaccgtatcggccgtacc
ggccgcgccgggcgctcgggtgaggccatttccctggtcgcgccagatgaagaaaaacta
ctcaagagcatcgagcgcgtcaccaagcagaaaatcgccgatggcgacctgatgggcttc
gatgcaagccaggtggaagccgagaagccagaagtacgcgaacgcccgcaaaacaacggc
cgcggtggccgtaaccagcaggctcgcggtgaaggcggcaaagacggcagcggtggccgc
aaggacaaaggcaaggacaaaggcaaggccaaaccacaagcggcggaaaaatctgccgac
aaggaaaaggccggcgacaagcaacagcctcgcaagccgcgtgacaagaagccacgccag
cagcaggcgagccaggcgagcgcgccgaaagcgccagccgaccgtgacccggaagagttc
ctggacgacgacgtcgacaatttcggcaaccgtgccgactacgtcagcccttaccagaac
gccaagaaccaaggccgcaaccgtcgcccaggtggcactgccggtgccggccagcaaggc
cagggcgctggccagcgcaacaacgggggtggccagggccgtaatggcgggcaaccacgt
aacgccagcggtgaaaagcgcccaccgcgcaacaacaatggcggtggcggccgtcgtgat
ggtggtgggcgcaaccgcccggccggtcgagacgatgggttgcgccaggagccggcagta
cgcagctcgcgcgagccgcagaaccagccggtgatcatccgcaaggagtccaagctcgac
cgttacccgacgcctgagcaactggacgacctgccaagccgcccccgtggcgagcgccct
gcgctgctgacccgcaagggctga
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