Pseudomonas sp. KU43P: KU43P_11700
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Entry
KU43P_11700 CDS
T10397
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pskp Pseudomonas sp. KU43P
Pathway
pskp03030
DNA replication
pskp03430
Mismatch repair
pskp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KU43P_11700 (dnaE)
03430 Mismatch repair
KU43P_11700 (dnaE)
03440 Homologous recombination
KU43P_11700 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pskp03032
]
KU43P_11700 (dnaE)
03400 DNA repair and recombination proteins [BR:
pskp03400
]
KU43P_11700 (dnaE)
Enzymes [BR:
pskp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KU43P_11700 (dnaE)
DNA replication proteins [BR:
pskp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KU43P_11700 (dnaE)
DNA repair and recombination proteins [BR:
pskp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KU43P_11700 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BBH44693
LinkDB
All DBs
Position
1311760..1315284
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
VKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWI
APASEGLIALSAGKEGDIGQALMAGRNDEAEALLRDWMGMFPQRFYVELQRTNRAGDEDY
VHAAVALADKLGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRPRMYSDQQYLK
SAQEMVELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIEADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNASEFKFTVNDDGRIIYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERVDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLFVEEDSDVYANHRKVR
ELTLKERLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMGAQALLQNDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHDALKGDRLNWLGELITRHRGGCPITLEYTGSDAKA
MLQFGDQWSIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaagccgctggccaaggcgctggcggggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagaccgccatgggcgccggg
gtcaagccgatctgcggtgccgacctgtggctggccggggccgacccggaggcgccgctg
tcgcgcatctgtttcctggccatggacccgaagggctaccgcaacctcaccgagttgatt
tcgcgtggctggactgacggccagcgcaatgggttggtgattctccagcgcgaatggatc
gcaccggccagcgaggggcttattgccctgtctgcgggcaaggaaggcgacatcggccag
gcactgatggccggccgcaacgatgaggccgaagcactgctgcgcgactggatgggcatg
ttcccacagcgcttctacgtcgaactgcagcgcaccaaccgtgccggcgacgaagattac
gtgcatgccgccgtggccctggccgacaagctcggcgcgccgctggtggcgaccaacgat
gtgcgcttcatcaagcagtctgacttcgatgcccacgaaagccgcgtctgcatcggcgaa
ggctggaccctggacgacccacgtcgcccgcggatgtacagcgaccagcagtacctcaag
agtgcgcaggagatggtcgagctgttcagcgacctgccagacgccattgccaacacggtg
gaaattgccaagcgctgcaacatccaggtacagctgggcaagtacttccttcccgacttc
ccgacgcccaacggcatgggcatcgacgactacttgcgtcatgtctcccacgaaggcctt
gaagagcgtctggcggtactctggccgaaagagaccacgcccaattacgaagagaagcgc
caggtctatctcgaccgcctgaagttcgaactggacatcatcatccagatgggtttcccc
ggttacttcctgatcgtgatggacttcatcaaatgggccaagaacaacggggtaccggtc
ggccctggccgtgggtcgggcgcaggttccctggtggcctacgtgctgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggatggccgtgaccgggtgatcgactacgtg
gccgaagcctacggccgcaacgcggtcagccagatcatcaccttcggcaccatggccgct
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcatacggtctggctgaccgt
ctgtcgaagatgatcccgttcgaagtggggatgaccctggagaaggcatacgagcaggaa
gagattctgcgcgacttcctcaagggcgacgaagatgcccgggaaatctgggacatggcg
ctcaagctcgagggtgtcacccgcggtaccggcaagcacgccggtggtgtggttatcgca
cccaccaagctgaccgatttttcgccgatcgcctgcgacgaagagggcggcggcttggta
acccagttcgacaaggatgacgtggaggccgccggcctggtcaagttcgacttcctcggc
ctgcgaaccctgaccatcatcaagtgggcgatggagacgatcaaccgcgagcaggccaag
aacaacctgcccgacgtcaatatcgacttcataccgctggatgaccgcaagacctacgag
ctgctgcagaaggccgaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagacctcatcgcactcgtggcgctgttc
cgccccggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgaactggcctacccgcactccgattaccagtacgaaggcctcaagcctgtactggct
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtcatggcc
ggttacaccctcggtggcgctgacatgctgcgccgggccatgggcaagaaaaagcccgag
gaaatggccaagcagcgcggcggtttcatcgaaggttgtgtcgccaacaatatcgaagcg
gacctggccggtaacattttcgacctggtggagaagttcgccggttacggcttcaacaag
tctcactccgccgcctacggcctggtctcctaccagacggcgtggctgaagacccactac
ccagcgccgttcatggccgcggtgctgtctgcggacatgcacaacaccgacaaggtggtg
gtgctgatcgaggaagtgcgcagcatgaagctgcgcctcgatgcacccgacgtgaacgcc
tccgagttcaagttcacggtcaacgacgacggccgcatcatctatggcctgggcgctatc
aaaggtgtcggtgaaggcccggtggaagccatcgtcgaagcgcgcgcccagggtgggcca
ttcaaggacctgttcgacttctgcgagcgcgtcgacctcaagcgggtcaacaagcgtacc
ctcgatgcgctgatacgcagtggcgcgctggatcgcctcggcccgcacttccatgacgag
atcaaggcctaccacgccagcatcgacatcaaccgtgcgaccttgctctcggccctggaa
gaggccatcaaggctgccgagcaaactgcacgcacggctgacagcggtcacgtcgacctg
ttcggcggcttgttcgtcgaggaagactccgatgtctatgccaaccatcgcaaggtgcgc
gagctgaccctcaaggagcgcttgaagggcgagaaggacaccctcggcgtatacctgacc
ggtcacccgatcgatgagtatgaaggtgaaatccgccgcttcgctcgccaacgcatcatc
gacctgaaaccatcgcgcgagacgcagaccatcgccggcatgatcattgccctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctcgacgaccgctccgggcgc
atcgaggcatcgctgttcgccgatgccttcatgggcgcccaggcattgttgcaaaatgat
gcaatggtggtggtggaaggagaggtcagcaacgacgatttctccggtggcctgcgcctg
cgcgtgaagcaggtgatgaccatggaagatgcccgcaccaagctggccgagagccttcgc
ctgaaggtggcccatgatgccctcaagggcgatcgcctgaactggctgggcgagctgatc
acccgccaccgcggtggttgcccgatcaccctcgaatacaccggcagcgatgccaaggcc
atgctgcaatttggcgatcaatggtcgatcgaccctgccgacggcctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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