Pseudomonas sp. KU43P: KU43P_37130
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Entry
KU43P_37130 CDS
T10397
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pskp Pseudomonas sp. KU43P
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pskp03032
]
KU43P_37130 (topA)
03400 DNA repair and recombination proteins [BR:
pskp03400
]
KU43P_37130 (topA)
Enzymes [BR:
pskp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KU43P_37130 (topA)
DNA replication proteins [BR:
pskp03032
]
Prokaryotic type
DNA Topoisomerases
KU43P_37130 (topA)
DNA repair and recombination proteins [BR:
pskp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KU43P_37130 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BBH47236
UniProt:
A0A5K7TYU3
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Position
complement(4106174..4108786)
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AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKNAK
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVIKREDRPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSSDALDMARSYIEREFGKQYLPDAPV
VYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSV
TVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMAQGEALKLIQLDPSQHFTKP
PARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKHVLDEFYGDFSKKLLTAESAENGMRANQPTMT
NIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICATAMDAYLLDEKHKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVEMPELKCEKVDDTYVLRDGA
SGLFLAASQFPKNRETRAPLVLEILPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTK
EQYVQSEVDGKPTGWKAFYDGNAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagtatcggccacatccgtgacctccccaccagc
ggttcggccagcgccagcaaagagccggccgccaagcgtggtaaggctgctgcgggtgag
gctccggccttgtcgccaaaagagaaggcccgtcgccagctggtggcgcgcatgggtgtc
gaccccgatcacggctggaaggccaagtacgagatcctgcctggcaaggaaaaggtgatc
gaagagctgcgccgcctggccaaggatgccgacaccatctatctcgcaaccgacttggac
cgcgaaggggaggccattgcctggcacctgcgcgaggccatcggtggcgacgacacccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaggctttctcgcag
ccaggcgagctggatatcgaccgcgtcaatgctcagcaggcacggcgcttccttgaccgc
gtggtgggctacatggtctcgccgctgctgtgggccaaaatcgcccgtggcctgtcggcg
gggcgtgtgcagtcggtggcggtgaagctggtggtcgagcgagagcgcgagatccgtgcc
ttcatccccgaagaatactgggaagtgcacgctgacctcggtaccgccaagaatgccaag
gtgcgcttcgaagtggctcgcgagaagggcgaggccttcaagccgctcaacgaagcccaa
gccatggctgcgctggagaagctcaaggcttccagctacagcgtcatcaagcgtgaagat
cgcccgaccagcagcaagccgtcggcgccgttcattacatccaccctgcagcaggccgcg
agcaaccgcctgggcttcggggtgaaaaagaccatgatgatggcccagcgtctgtacgaa
gccggttacatcacctacatgcgtaccgactcgaccaacctgtcgtccgacgccctggac
atggcgcgcagctacatcgagcgcgagttcggcaagcagtacctgccggatgcaccggtg
gtgtatggcagcaaggagggtgcccaggaggcgcacgaggcgattcgcccatctgacgtc
aacacccacccgaccaagctcagcggcatggagcgcgacgccgagcgcctgtacgagctg
atctggcgccagttcctggcctgccagatgccaccggcgcagtacctgtccaccagcgtc
accgtggcggctggcgacttcgagctgcgtgccaagggccgcatcctcaagttcgacggt
tatacccgtgtgctgcctcagcagagcaagccgggcgaagacgacgtgctgccggaaatg
gctcagggcgaggcgctgaagctgatccagctcgacccgagccagcacttcaccaagccg
ccggcacgcttcaccgaagccagcctggtcaaggaaatggaaaagcgcggcatcggtcgc
ccgtcgacctatgcggcaatcatctcgaccatccaggaccgcggctatgtgacgctgcac
aaccgtcggttctattccgagaagatgggtgacatcgttaccgagcgcttgtcggaaagc
ttctccaatctgatggactacggcttcacggccggcatggaggagaacctcgacgacgtg
gcccagggtgagcgtgactggaaacacgtgctcgacgagttctatggcgatttcagcaag
aaattgctgactgccgagtctgccgaaaacggcatgcgcgccaaccagccgaccatgacc
aacattccgtgcaaggaatgtggccgtccgatgatgattcgtactgcctccaccggcgtg
ttcctcggttgttccggctacagcctgccgccgaaagagcgctgcaaggccaccgtgaac
ctggtgccgggcgacgagatcgctgccgacgacgagggcgaatccgagtccctggtgctg
cgtggcaagcaccgctgcccgatttgcgccacggccatggacgcctacctgctcgacgag
aagcacaagctgcatatctgcggtaacaacccggattgcgccggctacgagatcgaagag
ggcagctaccgcatcaagggttatgaagggccgagcctggagtgtgacaagtgcggcagc
gagatgcagctcaagacaggccgtttcggcaagttcttcggctgcaccaacccggcgtgc
aagaacacacgcaagctgctcaagagcggcgaggctgcaccaccgaagatggacaaggtg
gagatgccagagctcaagtgcgagaaggtcgatgacacctatgtgctgcgtgacggtgct
tcggggttgttcctggccgccagccagttccccaagaaccgcgaaacgcgtgcgccgctg
gtgctggaaattctcccgcacaaacatgagatcgatccgaagtatcacttcctctgtgat
gcgccgcagaaggaccccgacgggcgcccggcggtaatccgctacagccgcaagaccaag
gagcagtacgtgcaatccgaggtcgatggcaagccgactggctggaaagccttctacgac
ggcaatgcctggaaggtcgaagacaagcgctga
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