Pseudomonas sp. KU43P: KU43P_38620
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Entry
KU43P_38620 CDS
T10397
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pskp Pseudomonas sp. KU43P
Pathway
pskp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KU43P_38620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pskp03019
]
KU43P_38620
03009 Ribosome biogenesis [BR:
pskp03009
]
KU43P_38620
Enzymes [BR:
pskp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KU43P_38620
Messenger RNA biogenesis [BR:
pskp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KU43P_38620
Ribosome biogenesis [BR:
pskp03009
]
Prokaryotic type
rRNA processing factors
KU43P_38620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBH47385
LinkDB
All DBs
Position
4287657..4290899
Genome browser
AA seq
1080 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIR
QVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDNPEVLNNQSSYEIAAAEAEEAPLPTATRTLVRQEAAVKTAPARANAPVPTAEAEQ
PAAPAVPAPSVPEPSLFKGLVKSLVSLFAGKEEPVAAPAVTAEKPASERTPRNEERRNGR
QQSRNRNGRRDEERKPREERAERTPREERQPREERAPREERAPREERAPRQPREDRRSNR
EERPVRELREPLDAAPAAREERQPREERVAREERAPREERAPREERAPREERAPREERAP
REERAPREERAPREERAPREERAPREERAPREERQPRPPREERQPRTAEQAAEQAAELAE
EQLPNEELLQDEQEGVDGERPRRRSRGQRRRSNRRERQRNANGELIDGGEEEGNEGNDEQ
PQQHQATALGAELAAGLAVTAAVASSNISAGAEAQANQQAERATAEAPVTDNSEAAQPAE
QVEIAAQADEAVIAPVVELPVSEPVAVVEASAEPVVEVAPQPAVEAEAAPAAEPVVVAET
PVEAPAVEAGEAEKAPAAFEAAPVVEPAPAVEAQPEVVAEAAPVVAEVAPVAAEPAPAEA
PAVVEAATVMLPNGRAPNDPREVRRRKREAEAAAKAAQEAAATAGEPALEAADEHKPHHG
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggacggccaacgt
ctctacgacctggacatcgagtccggcgcgcgtgagcagaagaaggccaacatctacaaa
ggcaagatcacccggatcgagcccagcctcgaagcggccttcgtcgacttcggctccgaa
cgtcacggcttcctgccgctgaaggaaatctcccgcgagtacttcaagaaggcccccgaa
ggccgcgtcaacatcaaggaagtgctgagcgaaggccaggaagtcatcgtccaggtcgag
aaagaagagcgcggcaacaaaggcgccgcactcaccaccttcatcagcctggcaggccgt
tacctggtcctgatgccgaacaacccgcgtgccggcggcatctcccgccgcatcgaaggc
gaagagcgcaacgaactgcgcgaagccctcaatggcctgaccgtaccgggcgacatgggc
ctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcagctgtggaccgccatcaaggaagcctcgctcgaccgcgccgcgccgttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtactgatcgacagcatcgacgcccaggaagaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtaccgctgttc
aaccgcttccagatcgaaagccagatcgaaactgccttccagcgcgtggtcgacctgccg
tccggcggctcgatcgtgatcgacccgaccgaggccctggtttccatcgacatcaactcg
gcgcgcgccaccaagggcagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gctgaagaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgactccggcgaagaatcagcgcgccgtcgaagagcgtgtgcgcgaatgc
ctggaggccgaccgcgcccgcgtccaggtaggccgcatttcgcgcttcggcctgctggaa
atgtctcgccagcgcctgcgcccgtcgctcggcgaaagcagcggtatcgtctgcccgcgc
tgctccggcaccggcatcatccgtgacgtcgaatcgctgtccctggccatcctgcgcctg
atcgaagaagaagccctgaaggaccgcaccgccgaagtgcgtgcccaggtgccgatcccg
gtggccgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgagctgcgtacc
cgtgcgcgcatcatcattctgccgaacgatcacctggaaaccccgcacttcgaagtccag
cgcctgcgcgatgacaacccggaagtgctgaacaaccagtccagttacgaaatcgctgct
gccgaagccgaagaagcgccgctgccgaccgctacccgcaccctggtgcgccaggaagct
gcggtgaagactgcaccggctcgcgccaacgcacctgtgccaaccgctgaagcagagcag
cctgccgcaccagctgtacctgcaccgagcgtgccggagccgagcctgttcaagggcctg
gtcaagtcgctggtcagcctgttcgccggcaaggaagaacccgtcgccgccccggccgtg
actgccgagaagccagccagcgaacgcacgccgcgcaacgaggagcgtcgcaacggccgt
cagcagagccgcaaccgtaacggccgccgtgacgaagagcgcaagccgcgtgaagagcgt
gccgagcgcactccgcgtgaagaacgtcagcctcgcgaagagcgtgcaccgcgtgaagaa
cgcgcaccacgcgaagaacgtgcaccgcgccagccccgcgaagaccgccgcagcaaccgc
gaagagcgcccggtacgcgagctgcgcgagccactggatgccgcaccggccgcccgtgag
gagcgtcagccgcgcgaagagcgtgtagcccgtgaagaacgcgcccctcgtgaagagcgt
gcaccacgtgaagaacgcgcccctcgcgaagaacgtgcaccgcgtgaagagcgtgcaccg
cgtgaggaacgtgctccacgcgaagagcgtgcgccgcgcgaggaacgtgctccacgcgaa
gagcgtgcaccgcgtgaggaacgtgctccacgcgaagagcgtcaacctcgcccgccgcgt
gaagagcgtcagccacgcaccgccgagcaggccgccgagcaagctgcagaactcgccgaa
gagcaactgccgaacgaagaactgctgcaggacgagcaggaaggtgtcgatggcgagcgt
ccgcgtcgtcgctcccgcggccagcgtcgtcgcagcaaccgtcgcgagcgccagcgcaat
gccaacggcgagctgatcgatggcggcgaagaagaaggtaacgaaggcaacgatgagcag
ccgcaacagcaccaggccaccgcgctgggtgccgaactcgctgccggcctggccgtcacc
gctgctgtcgccagcagcaacatcagcgcgggtgccgaggctcaagctaaccagcaggcc
gaacgcgccactgccgaagccccggttaccgacaatagcgaagccgctcagccggccgag
caggtcgaaattgccgcccaggccgacgaagccgtgatcgcgccagtggtcgagctgcct
gtcagcgaacccgtcgccgtggtcgaagccagcgctgagccagtggtcgaagtagcacca
cagccagcggtcgaagctgaagccgctcctgccgctgagccggttgtagtcgccgaaacg
cctgtcgaagccccagccgtcgaggccggtgaagcagagaaggcaccagcggcattcgaa
gctgcgcctgttgtcgagccagcaccggccgtcgaagctcagccagaggtggtcgcagag
gctgccccggttgttgccgaagtggcacctgtggctgccgagcctgccccggctgaagca
ccggcagtggttgaggccgctaccgtaatgctgcccaatggccgcgcaccgaacgaccca
cgtgaagtgcgtcgccgcaagcgtgaagccgaagccgccgccaaagctgcccaggaagct
gccgctactgccggtgagcctgcgctggaagccgccgatgagcacaagcctcatcacggt
tga
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