Pseudomonas sp. KU43P: KU43P_38870
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Entry
KU43P_38870 CDS
T10397
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pskp Pseudomonas sp. KU43P
Pathway
pskp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KU43P_38870 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pskp03019
]
KU43P_38870 (deaD)
03009 Ribosome biogenesis [BR:
pskp03009
]
KU43P_38870 (deaD)
Enzymes [BR:
pskp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KU43P_38870 (deaD)
Messenger RNA biogenesis [BR:
pskp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KU43P_38870 (deaD)
Ribosome biogenesis [BR:
pskp03009
]
Prokaryotic type
rRNA helicases
KU43P_38870 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
BBH47410
UniProt:
A0A5K7U0C7
LinkDB
All DBs
Position
complement(4315315..4316994)
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AA seq
559 aa
AA seq
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MTQETGGFAALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAS
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSARAL
ASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERADRGERREGGDRERRAPMPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLSK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatcttaatccgaatattgttgctgcc
gttctggcgaccggctacgaagaaccgtccgccattcagcaacaatcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgatgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagctaccgctttcgaaacctacgccaagcag
atgccaggcgtgaatgtcgtggccgtctatggtggtgccccgatgggcccacagctgcgt
gccattcgcaacggcgcgcaaatcgtcgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtccaccgtacagtacctggtactggacgaagcggacgaa
atgctgaagctgggcttcatggacgacctcgaagtgatcttcgatgccatcccggcctcg
cgccagaccgtgctgttctccgccaccctgccgtcgtcgatccgctcgatcgccgaacgc
cacctgcgcgagcccaagcacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gaccaggcccacctgatggtccacgccgaccagaagatcccggctgtgctgcgtctgctg
gaagtcgaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggccgccgcgctggaagccaagggctacaaggctgccgcgttgaacggtgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctcaaggatggccgcctggacatcgtagtc
gccaccgacgtcgccgcccgtggcctggacgtaccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatccggagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgcgcactgctgctggtcaccccgcgtgaacgccgcatgctgcaggtgatc
gagcgcgtgaccgggcagaaggttgccgaagcacgtctgccaaacgcccaagcggtgctt
gatgcgcgtatcaagaagctgacctcgagcctggctccgctggtagccgaagcagaagcc
acccatggcgaactgttcgaccgcctgaccaccgacctgggctgcagcgcccgcgccctg
gcttcggccctgctgcgcaaggccaccaatggccaggcgttggaccttgccgcggtagag
cgcgagcagccgctggtaccgagcttcgccccacgtggcgagcgcaccgaacgcgctgac
cgtggtgagcgccgcgagggtggcgaccgcgagcgtcgtgcgccgatgccgctggccgaa
ggccgcgtgcgttgccgtaccgccctgggtgcccgtgacggcatcgctgccaagaacctg
ctgggtgcgatcctcaacgaaggtggcctggcacgtgacgccatcggccgtatccaggtg
cgcgacagcttcagcctgatcgagctgccggaagatggcctggagcgtctgctgtccaag
ctcaaggacacccgcgtagccggtaagcagctcaagctgcgccgctaccgcgaggattga
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