Pseudomonas sp. KU43P: KU43P_44490
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Entry
KU43P_44490 CDS
T10397
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pskp Pseudomonas sp. KU43P
Pathway
pskp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KU43P_44490 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pskp03019
]
KU43P_44490 (rhlB)
Enzymes [BR:
pskp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KU43P_44490 (rhlB)
Messenger RNA biogenesis [BR:
pskp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KU43P_44490 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
DUF7464
Motif
Other DBs
NCBI-ProteinID:
BBH47972
LinkDB
All DBs
Position
4931507..4932967
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AA seq
486 aa
AA seq
DB search
MLKALKKIFGKGDAAPQAVAPAASVTPPAPAAAPAAQPGPRREPAHGKPSAKVETPAPLP
AAEKSAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGFPYC
TPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAP
TRELVVQIAKDAVALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQR
GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQ
WTTNPAVVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRR
IEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINF
TLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDELLKP
VPRKHH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaggcactcaagaaaatattcggcaagggagacgccgcgcctcaggccgtcgct
cctgctgccagcgtcacgccgcctgcgcccgccgcagcccctgcggctcagcccgggccg
cggcgcgagccagcccacggcaaacccagcgccaaggtcgaaacgcccgcccccctccct
gccgccgaaaaatcggccaaggacaagccgcgccgcgaacgcaagcccaaaccccaggcc
agcctgtggaagccggaagacttcgtggtcgagccgcaagaaggcaagacccgcttccat
gacttcaagctctccaacgagctgatgcatgccatccacgacctcggcttcccatactgc
acgccgatccaggcccaggtactgggctacaccctgcgtggccaggatgccatcggccgc
gcccagaccggtaccggcaagaccgccgcattcctcatttcgatcatctcccagttgcag
cagacgccgccgcccaaggaacgctacatgggcgaaccgcgcgcgctgatcatcgcgccg
acccgcgaactggtggtgcagatcgccaaagacgccgttgccctgaccaagtacaccggc
ctgaacgtcatgagcttcgtcggcggcatggacttcgacaagcagctcaaggccctggaa
gctcgccattgcgacatcctggtggccaccccgggtcgcctgctggacttcaaccagcgc
ggcgaggtgcacctggacatggtcgaggtgatggtgctggacgaagccgaccgcatgctc
gacatgggtttcatcccccaggtacggcagatcattcgccagaccccacccaagagcgag
cgccagacgctgttgttctccgccaccttcaccgacgacgtgatgaacctggccaagcag
tggaccaccaacccggccgtggtcgagatcgaaccggaaaacgtcgccagcgaaaccgtc
gagcaacacgtctatgcggtggccggcagcgacaagtacaagctgctgtacaacctggtg
acccagaacaaatgggaacgggtgatggtgttcgccaaccgcaaggacgaagtgcgacgc
atcgaggagaagctggtacgcgacggcatcaatgccgcgcaattgtcgggcgatgtgccg
cagcacaagcgtatccgcaccctggaaagcttccgcgaaggccgcatcaccgtgctggtg
gccaccgacgtggctggtcgcgggattcacatcgatggcatcagccatgtgatcaacttc
accctgccggaagatccggatgactacgtgcaccgtattggccgtaccggccgggcgggc
accagtggtgtgtcgatcagctttgcgggcgaggatgactcctaccagctgccggcgatc
gaagagctgctggggcgcaagatcaagtgcgagatgccgccggatgagctattgaagccg
gtgccgcgcaagcatcattga
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