Pseudomonas sp. KU43P: KU43P_44900
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Entry
KU43P_44900 CDS
T10397
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pskp Pseudomonas sp. KU43P
Pathway
pskp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pskp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KU43P_44900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pskp03021
]
KU43P_44900
Transcription machinery [BR:
pskp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KU43P_44900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
HTH_7
HTH_23
HTH_24
HTH_IclR
HTH_28
HTH_29
GerE
TnsD
PhyR_sigma-like
DUF2089
HTH_10
LacI
Xre-like-HTH
YdaS_toxin
DUF1492
HTH_38
HTH_20
HTH_36
HTH_3
HTH_11
MarR
Phage_NinH
HTH_17
CENP-B_N
HTH_26
HTH_5
Motif
Other DBs
NCBI-ProteinID:
BBH48013
LinkDB
All DBs
Position
4980523..4981017
Genome browser
AA seq
164 aa
AA seq
DB search
MSSALSSTVEGLYHAHHNWLTGWLRRRLGCPQSAADLAQDTYVRLLQAREAPQLVEPRAF
LATVAKRVLCNHFRRQELERAYLEALAQVPESVAPSEEQKAIIFETLLELDRLLDGLPPL
VKRAFLLAQIDGMGQSEIARELGISLATVKRYLNKAALRCYFAL
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
gtgtccagcgccctctcttccacggtcgaaggtctctaccacgcccatcacaactggctg
accggctggctgcgccgtcgcctgggctgcccgcaaagcgccgccgacctggcccaggac
acctatgtgcgcctgctgcaggcgcgcgaagcgccgcaactggtcgagcctcgcgccttc
ctcgccaccgttgccaagcgtgtgctgtgcaaccacttccgccgccaggagctggaacgc
gcctacctcgaggccctggcccaggtaccggagagcgtcgccccgagcgaagagcagaag
gcgatcatcttcgaaaccctgctggagctcgaccgcttgctcgatggcctgccgcccctg
gtcaagcgcgcgtttctcctggcccagatcgatggcatgggccagagcgagatcgcccgc
gagctgggcatttcgctcgccacggtcaaacgctacctgaacaaggcagccctgcgctgc
tacttcgccctgtga
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