Pseudomonas sp. KUIN-1: KUIN1_05900
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Entry
KUIN1_05900 CDS
T09878
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psku
Pseudomonas sp. KUIN-1
Pathway
psku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUIN1_05900 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psku03019
]
KUIN1_05900 (rnr)
03016 Transfer RNA biogenesis [BR:
psku03016
]
KUIN1_05900 (rnr)
Enzymes [BR:
psku01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KUIN1_05900 (rnr)
Messenger RNA biogenesis [BR:
psku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KUIN1_05900 (rnr)
Transfer RNA biogenesis [BR:
psku03016
]
Prokaryotic type
tRNA degradation factors
KUIN1_05900 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
BBN61400
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All DBs
Position
671346..673979
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AA seq
877 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLAERGSPASREQLVEEFGLTTEDQFEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRAHESIVGRYFEESGIGFVVPDNPKIQQEV
LVTPGRNNGAKIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEHRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYVFYEGIIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGDVVP
HLKQLYAMYKVLLGARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAQFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLTLHKGKEGPTPKDYQALLE
TVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSKQDTPHVRRAGAATIPKARIYPYDDALLDQLGEQCSMSERRADEATRDVVNWLKCE
YMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGERTG
RNFRLGDTVEVRVMRVDLDERKIDFEISEAAAAAKPTARKRRGNDTAAPAATTTAEKDKA
PAKSGRRSASTKESSPEAYRPSDAAAKNAEVRKSRELKKALLADAKGGSKASSGKSDRSG
SAPSSGKPASKHRKGSSKTGSAPAAKSSGARKPKAKS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcccagccgcgagctgatcttgcagcaccttgccgagcgcggttcgccggccagt
cgcgagcaactggtcgaagagttcggcctgaccaccgaagatcaattcgaggctctgcgc
cgccgccttcgggcgatggagcgtgacgcccagttgatctacacccgtcgcggcacttac
gcaccggtagacaagcttgacctgatcctcggtcgcatctccgggcatcgtgatggcttc
ggctttctggtgccggacgacggctccgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgacggtgaccgggcgctggcgcgtgtttccggccttgaccgtcgcggccgc
cgcgaaggcgtgatcgtcgaagtgatctcgcgtgctcacgaaagcatagtgggtcgctat
ttcgaagaaagcggcattggttttgtcgtacccgacaacccgaaaatccagcaggaagtg
ctggtaacgccgggtcgtaacaacggcgccaagatcggccagttcgtcgaggtgaaaatc
acccattggccgacaccgcgattccagccgcagggcgatgtgatcgaagtggtgggcaac
tacatggcgcccggcatggagatcgatgtcgcgctacgtacctacgacattccgcacgtg
tggcccgaggccgtactcaaagaggctgccaagctcaagccggaagtcgaagagaaggac
aaggaacaccgcgtcgatctgcgccatctgccgttcgtgaccatcgacggcgaagacgct
cgcgacttcgacgatgcggtctattgcgaagccaaaccgggcaaactgcgtttgttctcc
ggcggctggaagctctacgtggcgattgccgacgtatcgagctacgtgaagatcggctcg
gcgctggatgctgaatcccaggtgcgcggcaactcggtgtatttccccgagcgcgtcgtg
cccatgctgcctgagcaattgtccaacggcctgtgctcgctgaacccgcacgtcgatcgt
ctggccatggtttgcgagatgaccatctccaagaccggcgagatgactgactacgtgttc
tacgaaggtatcatccactcccacgctcgcctgacctacaacaaggtcagcacgattctg
gaacagccgaaaaccgctgaagccaagagcctgcgcggcgaatacggcgatgtggtgccg
cacctcaaacagctttatgcgatgtacaaggtattgctgggcgcgcgccatgttcgtggt
gcgatcgatttcgaaactcaggaaacccggatcatcttcggttccgagcgcaagattgcc
gaaatccgtccgaccacccgtaacgatgcccacaagctgatcgaggaatgcatgctggcc
gccaacgtggccaccgcgcagttcctgaagaagcatgaaattcctgcgttgtaccgcgtc
cacgacggtccgccgccagagcgcctggaaaaactgcgcgcattcctcggtgagctgggt
ctgacgctgcacaaaggcaaggaaggtccgacacctaaggattatcaggcgctgcttgaa
accgttcgcgaccgtcctgactaccacctgatccagaccgtgatgttgcgttcgttgagt
caggcggtctacagctcggacaacaacggtcactttggtctgaattacgaagcgtatacg
cacttcacgtcgccgatccgtcgttatccggacctgctgactcatcgcgcgatccgcagc
gtcattcgctccaagcaggatacgccgcacgttcgtcgtgccggtgctgcgacgattccg
aaggcgcgcatttacccgtacgacgatgcgctgctcgaccagttgggcgaacaatgctca
atgagcgagcgccgtgccgacgaggctacgcgcgacgtagtcaactggctcaagtgcgaa
tacatgaaggatcgcgtcggcgagtcgttcccgggcgtgatcaccgctgtaaccggcttt
ggtctgttcgtcgagctcaccgatatctatgtcgaaggcctggtccacgtgaccgccttg
ccgggtgactactaccacttcgatccgctgcaccaccgccttgccggcgagcgtaccggg
cgtaacttccgcctgggcgacaccgttgaggtgcgggtcatgcgcgtcgatctggacgag
cgcaagatcgatttcgagatatccgaagcggcagcggctgcgaagccgacggcgcgcaag
cgtcgtggtaatgacaccgcggcacctgctgccacaaccacggctgaaaaggacaaggcg
ccggccaagtccgggcgtcgtagcgcttcgaccaaggaaagcagccccgaagcgtatcgc
ccgagcgatgccgcggcgaaaaacgcagaagtgcgtaaaagccgcgagctgaaaaaagcg
cttctggcagacgcgaagggtggtagcaaggcatcgtcgggaaagtctgacaggtcgggc
tctgcgccttcatcgggcaagccggccagcaaacaccgtaaaggctcgtcaaaaacgggc
tccgcgccagctgcgaaaagcagtggcgctcgtaaacccaaggccaagtcatga
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