Pseudomonas sp. KUIN-1: KUIN1_11110
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Entry
KUIN1_11110 CDS
T09878
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psku
Pseudomonas sp. KUIN-1
Pathway
psku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUIN1_11110 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psku03019
]
KUIN1_11110 (rhlB)
Enzymes [BR:
psku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KUIN1_11110 (rhlB)
Messenger RNA biogenesis [BR:
psku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KUIN1_11110 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BBN61921
LinkDB
All DBs
Position
complement(1230324..1231781)
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AA seq
485 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQPAPTPITSIPASPAATGDTPDHAVQTQALDTTSEPSKARAPR
TDKPRAERPRRERVAKPPAPEWKLEDFVVEPQEGKTRFHDFNLAPELMHAIQDLGFPYCT
PIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPT
RELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRG
EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQW
TTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRI
EERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFT
LPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRAV
VRSNA
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcacttaaaaagatgttcggtaagagcgaggctgagcagcctgcg
cctactccgataacctctattcccgcctctcccgctgccacaggcgacacaccggatcat
gctgtccagactcaggctctggacacgaccagcgagccctccaaagccagagcgccgcgc
accgacaagccaagggccgagcgcccgcgccgcgaacgcgtagccaaaccgcccgccccg
gaatggaaactcgaggatttcgtcgtcgagccgcaggaaggcaagacccgcttccatgac
ttcaacctcgcgcctgaactgatgcacgcgattcaggacctgggtttcccgtactgcaca
ccgatccaggcgggcgtactgggcttcaccctcaagggcaaggatgcgatcggacgcgcc
cagaccggcaccggcaagactgctgcgtttctgatctcgatcatcgagcaactgacccag
acgccgccgcctgcagaacgctacatgggtgaaccgcgcgcgctgatcatcgctccgacc
cgcgagctggtggtgcagatcgccaaggacgccgccgacctgaccaagtacaccaacctg
aacgtcatgaccttcgtcggtggcatggacttcgacaagcagctcaaacaactcgaagca
cgccactgcgacatcctggtcgccacgccaggccgcctgctggacttcaaccagcgcggc
gaagtgcatctggacatggtcgaagtgatggtcctcgacgaagccgatcgcatgctggac
atgggctttatcccgcaggtacgccagatcattcgtcagacgccgcacaagggtgagcgc
cagaccctgctgttctccgcgaccttcaccgaagacgtgatgaacctcgccaagcagtgg
acgacggacccttccatcgtcgagatcgaatcgttgaatgttgccagcgacaacgtcgaa
cagcatatctatgccgtcgccggtgccgacaagtacaagctgctctacaacctggtgacc
gacaacggttgggaacgggtgatggtcttcgccaaccgcaaggacgaagtccgacgcatc
gaagagcgcctggtgcgcgatggcgtgaacgcggcgcagctgtcaggcgatgtgcctcag
cacaagcgcatcaagacccttgaaggcttccgcgaaggcaagatccgcgtgctggtcgcc
accgatgtggccggtcgcggcattcacatcgacggcatcagccacgtgatcaacttcacc
ctgcccgaagtgccggacgattacgtgcaccgcatcggccgtaccggtcgcgctggcgcc
gatggcgtgtcgatcagttttgccggcgaggatgactcttaccagttgcccgccatcgag
gaaaaactgggccgcaagatcagttgcgagacgccgccgactcatctgctcagggccgtg
gtgcgcagcaacgcctga
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