Pseudomonas sp. KUIN-1: KUIN1_17220
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Entry
KUIN1_17220 CDS
T09878
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
psku
Pseudomonas sp. KUIN-1
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psku03000
]
KUIN1_17220
Transcription factors [BR:
psku03000
]
Prokaryotic type
Helix-turn-helix
Other families
KUIN1_17220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
HTH_7
AAA_5
HTH_23
Mg_chelatase
nSTAND6
AAA_2
AAA_3
HTH_20
HTH_11
HTH_22
HTH_3
HTH_10
HTH_17
AAA
dnstrm_HI1420
nSTAND3
HTH_29
DUF2089
HTH_24
HTH_28
HTH_36
Xre-like-HTH
Phage_CP76
HTH_psq
PAS_7
AAA_7
TetR_N
MerR
RsmI_C
HTH_Tnp_1
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
BBN62532
LinkDB
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Position
complement(1903469..1905325)
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AA seq
618 aa
AA seq
DB search
MSQTSASLAHDIIIQDSWTRCRDFGLSHQTCPSFGQLPGTEVSRLLERHHGLVQTTHQEV
LPVYENILSNSSCLILLADPQGQLLKSWGAQRFVESSQAQGFMPGASWNERGTGTNAIGT
ALACEEAIHIEPDEHFLKANRFMTGSASPIFDADRRIIAVLDVSSDSFLPPSHTLGMVKM
MSQSVENRLILDQFRDSHFQLIFNTGLNNLDSQWAGLLIFDESGQILCANRRADALLGTT
PAGASIETLFKCPILQLLSETEARPFALHAFGNNRFQCLLKRPTRKPLKLHCVQAAQVPA
APSRNLDLQAISLGDAKVEKAVRQAQRLLEKDIPLLIHGETGVGKEVFVKALHQASVRAS
QPLIAVNCAAIPADLVEAELFGYERGAFTGANQKGSIGLIRKADKGTLFLDEVGDMPMPV
QARLLRVLQERCVQPLGSSELYPVDIRLISATNRGLRDQVQAGLFRQDLYYRISGLSIEL
PPLRERTDKHALIQRIWERHRDAHQRAGFSREVLELFEHHPWPGNLRQLNSVIQVALALA
DEQPIGTDHLPEDFLLDAHADEECRAPVRTQESATRLHSSEDLGQLFQAAGGNISQLAKR
LGVSRNTLYKRLREQRIV
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaccagcgcttcgcttgctcacgacatcatcattcaggattcatggacccgc
tgccgggacttcggcctcagtcatcagacgtgcccctcattcggccaattgccagggacg
gaggtttccaggctgctggagcgccatcacggactggtacagaccacccatcaggaggtc
ctgccggtctacgaaaacattctcagcaactccagctgtctgattctgctggccgaccct
caaggtcagttgctcaagtcatggggtgcacaacgcttcgtcgaatcgtcccaggctcaa
ggcttcatgccaggtgccagctggaacgaacgcggcacgggcactaacgccatcggcacg
gcgctggcctgcgaagaggccatccatattgaaccggacgagcatttcctcaaggccaac
cgtttcatgaccggttcggcctcaccgatcttcgacgcagacaggcgcatcatcgccgtg
ctggatgtgtccagcgacagcttcctgccaccttcacacacgctgggcatggtcaaaatg
atgagccagtcggtggaaaaccgcctgatcctcgaccagtttcgcgattcccacttccag
ctgatcttcaataccggtcttaacaacctcgacagccaatgggctggcctgctgattttt
gacgaaagcggccagatcctgtgcgccaatcggcgtgccgacgctttgctggggacgact
ccggccggtgccagcatcgagacgctgttcaagtgtccgatcctgcaactgctcagcgag
accgaagcgcgtccgtttgcgctgcatgcatttggcaacaatcgctttcagtgcctgctc
aaacgcccgactcgcaaaccattgaagctgcattgcgtccaggctgcgcaggtgcctgca
gcaccatcacgaaaccttgacctgcaggccatcagcctgggcgatgcgaaagtcgagaag
gctgtgcgtcaggcccaacggctgctggaaaaagacatcccgctgctcattcatggtgaa
accggggtcggcaaggaagtgtttgtcaaagccctgcatcaggccagtgtgcgcgccagc
cagccgctgatcgcggtcaactgtgcagcgatcccggccgacctggtcgaggccgagctg
tttggctatgaaagaggcgccttcaccggggccaaccagaaaggcagcatcggcctgatc
cgcaaggccgacaaaggcacgctgtttctcgacgaagtgggcgacatgccgatgccggta
caggcgcgactgctgcgtgtgctgcaagagcgctgcgttcagccattgggcagcagcgag
ctgtatccggtcgatatacggctgatttcagccaccaaccggggcctgcgcgatcaggtc
caggcgggcctttttcgccaggatctttattatcggatcagcggcctgagcatcgaactc
ccgcccctgcgcgagcggactgacaaacatgcgctgatccagcgaatctgggagcggcac
cgtgatgctcaccagcgcgcgggcttttccagagaagtgcttgaattattcgagcatcac
ccctggccgggcaacctgcgtcagctcaacagcgtgattcaggtggcgctggcactggcc
gacgaacagccgatcggcactgaccatctgcccgaggactttctgctcgacgctcacgcg
gatgaggaatgccgtgccccggtcaggactcaggagtcggccacgcgccttcactcgagc
gaagacctcggccaattgtttcaagcggcaggcgggaatatttcacagctggccaaacgt
ctgggcgtcagccgtaacacgctgtacaagcggttgcgggagcagcggatcgtttag
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integrated database retrieval system
