Pseudomonas sp. KUIN-1: KUIN1_28310
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Entry
KUIN1_28310 CDS
T09878
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psku
Pseudomonas sp. KUIN-1
Pathway
psku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUIN1_28310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psku03019
]
KUIN1_28310
03400 DNA repair and recombination proteins [BR:
psku03400
]
KUIN1_28310
Enzymes [BR:
psku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUIN1_28310
Messenger RNA biogenesis [BR:
psku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KUIN1_28310
DNA repair and recombination proteins [BR:
psku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KUIN1_28310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
DUF2250
Motif
Other DBs
NCBI-ProteinID:
BBN63641
LinkDB
All DBs
Position
complement(3340822..3345993)
Genome browser
AA seq
1723 aa
AA seq
DB search
MREAYYKDAVQMVLPDQPKSLIFDLEVVPGKPNQTDRIFMVGAMRPDKDEELEHKVNKDL
PAVLEALDRLGQGASFVLGHNVIDHDLPILLEQAAHLALHQLPVIDTLRLSPLAFPQNPY
HRLVKDYKLVRDSLNSPLSDCRSTLTLFNDQRRAFKDLSINLQSELLCYQALLAPMPDSD
LGAFFTSITGQAPRSLKEIRHLIPELLRETDPALTRTSKVCSKRLNQLLQRDLMDDSQRW
PLAYALAWLRVSGGNSVLAPWVRHQFPATGKLIAELRDIPCGESQCDYCSTTHDPRHELR
RYFAPIQDFRTEPDGRSLQHDVVLAGMQGKHVLAILATGGGKSLCYQLPALNRFHRNGSL
TIIISPLQSLMKDQVDGLLARNVQCAATLNGLLTMPERAEVLEKIQLGDVGILLVSPEQF
RNMAFRRAISQRQVGAWIFDEAHCLSKWGADFRPDYLYVSRFIKQFSGDGPLAAIGCFTA
TAKPDVLEDIEQHFKEQLGITFKHFIGTHERTNLHFEVLPCSRSEKRHHAQTLIEEELGT
SEGGAVIFVSSRKGAEELADFLIGHGWACKYFHAGLEPHEKKDIQDAFKGGELKIIVATN
AFGMGVDKPDIRLVIHADIPGSLENYLQEAGRAGRDQGQARCVLLYDAQDIENQFGMCEG
SKLTLRDIQQILRKLRKESDRRKGSRLVITAGEVLMDEHVDTSFEAGERDAETKVATAVS
WLERGQFLKREENQTQIFPASLKLTKEEADKRLATVKLSARRLEEFRAILSYLYEANVDE
RINTDALMALTSLTSEEVTATLRQMEDLGLLVNDSKLTLYVRHGVVFPSTQRLQATLQLE
SALFDLLQELAPEAESGEWQDLNVPLLTSTLKTASGNKDLIPLHVLRLLRSLAQDHDSNS
QQRSSFELRQITQDFLKLRIRGGHNWRAIQGLGERRRALAAVVLTFLIGKLPPGSRNKDL
LVDTTFGELMGLIDLDLELRTRIPESQRRKAVEHVLLYLHKQEVITLNHGMTVMRRAMTI
EVEGGKRTGFLKDDYQRLDEHYREKRIQVHVMREYAEVGLGSMGYALDLVQHYFTLAKQE
FIRRYFVDREEVLKLATSEESWRSIVEKLSAAQRIIVSDDDDVNRLILAGPGSGKTRVIV
HRIAYLLRVRRVPARCIVALTFNRHAANEIKQRLIKLVGADAFGVNVMTYHRMAMRLTGT
RFERGETLEEGRLAQVMGEAVELLEGKRQVEGEDDLREQLMRGYRYILVDEYQDIDDLQY
RLVSALAGRKSEEEGRLCILAVGDDDQNIYAWRDTNNRYIERFRDEYSATKNYLVDNYRS
SGRIIDAANRVIGRNPDRLKKDHPIQIDTVRRAMPKGGDWETLDIEREGRVLRLKIDAQG
HARANLQAQAAMTELQRLLSLDSEDWHGCAVLARTHQNLLPLQAWCEAHGVPYCLAADKE
GVLPLTAQRGFVQAVEILRETTEPLSASETWTYLGKRQLGPEWYDMLLVAFDQLTAEFGQ
CPLSAEILLDWLYDYFRELRQQPRKGLYLGTVHSAKGLEFRHVVVLDGGWSTQPETLSDE
RRLYYVGMTRAEQTLTLCEYPEGNPFCSQLTEEVMARTFQGKYLAELEKRYLQLSLKDID
LDYAGRQNPTASIHKVLAALEPGDMLSFKAHEDRYLIQDANGYVIGRTAKSFSLDLDIEE
CEVAAVLVRRSDRCEESFRAYHRSQEWELVVPRIAGRVVMSDT
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgcgagaggcttattacaaggatgctgttcaaatggttttaccggatcaacctaaaagc
ctgatttttgacctggaagtcgtccccggcaaacccaatcaaactgaccgcatatttatg
gttggtgcgatgcgtcctgataaggacgaggagcttgagcataaggtcaacaaggacttg
cctgcagtgcttgaggcccttgatcgcttagggcagggcgctagctttgtacttggccat
aacgttatcgaccatgatttacccatacttctagagcaagctgcgcatctggcattacac
cagctgccggtgatagacaccctacgcctatcgcctttggcctttccacaaaacccgtat
caccggctggtcaaagattacaaactcgttcgtgacagcctcaactcaccactgtccgat
tgccgctcaaccttgacactgttcaatgatcagcggcgagcattcaaagatctgagtatt
aatctgcaatcagaactgctctgctaccaagcgctgctcgctccaatgccagatagcgac
ctgggggcgttctttacctcgataactggtcaggcgcctagatccctcaaagaaattcgt
cacctgatcccagagctacttagggaaactgacccagcgttgacgcgcacttccaaggtt
tgcagtaaacgactgaaccagttgttgcaacgcgacctcatggacgacagccagcgttgg
ccacttgcttatgcgctggcctggctgcgcgtgtcaggcggcaactcggttctggcacct
tgggtacgccatcaatttcctgcaacaggtaaattgattgctgaactgcgtgatattccc
tgcggggagagccaatgcgactattgcagcaccactcatgatcctcgccacgagctcagg
cgctacttcgctcctattcaggactttcggaccgaaccagacggacgctccttacagcat
gacgtggtgctggcaggcatgcagggcaagcacgtgctcgcgattcttgcgacagggggc
ggaaaatccttgtgctaccagttaccggcgctgaaccgctttcaccgcaacggcagcttg
acgatcatcatatcgccgctgcagtcgctgatgaaagatcaggtcgacggcctactggct
cgtaacgtccaatgcgctgcaactttgaatggtctgttgaccatgcccgagcgggcagag
gtgctggagaagatccaattaggcgatgtgggcattttgctggtatcccccgagcagttt
cgcaatatggcttttcgccgcgcgatctcccagcgtcaggtcggcgcctggatcttcgat
gaggcgcattgtttgtccaaatggggcgcagattttcgcccggattacctctatgtatcg
cgcttcatcaagcagttctctggggacggtccgctcgcggcgattggctgctttacggct
acggccaaacctgatgtgcttgaggacatcgaacagcatttcaaagagcagttgggcata
accttcaagcactttatcggtacccacgagcgtaccaatctgcacttcgaggtcctgccg
tgttctcgctcagaaaagcgccaccatgctcagacgttaattgaggaagagctaggcacc
agcgagggtggcgcggtgatattcgtttcaagccgaaaaggcgctgaagagcttgcagac
tttttgatcggccacggatgggcttgcaagtacttccacgctgggctggagccacatgaa
aaaaaagatattcaggacgccttcaagggcggggaactgaagattatcgtggccaccaac
gcttttggcatgggcgtcgacaaacccgatattcgcttggtgatacatgctgatattcca
gggtcgctcgagaactacttacaagaagccggtcgcgccggtcgcgatcaagggcaggct
cggtgcgtacttctgtatgacgctcaggacatcgaaaaccagttcgggatgtgcgaaggt
tcgaaactgaccctgcgtgatatccagcaaatcctgcgcaagttgcgcaaggagagcgac
cgacgcaagggcagcaggctcgtcatcactgccggtgaggtgctgatggatgagcatgtt
gatactagctttgaagccggagaacgtgatgctgaaaccaaggtagccacggcagtgtcc
tggcttgagcgagggcagtttttaaaacgggaggagaaccagacccaaatctttccggca
agcctgaagttgactaaggaggaggccgataagcgtctggccaccgttaagttatcggcc
aggcggctcgaagaattcagggctatcttgagttatctgtacgaagctaatgtcgacgag
cgaatcaacaccgacgccttgatggctctgactagcctcacgtccgaagaagtcactgcg
acactgcgtcagatggaggacttggggcttttggttaacgactctaagctgaccttatac
gtccgacatggggtcgtgttcccttccactcaacgcctgcaagctaccttacagctcgag
tctgccttgttcgacctgctgcaggaactggcgcctgaggccgagagtggggaatggcag
gacctgaacgtgccactgttgacctcgacgctcaaaacagcttctggtaacaaggacctg
ataccgcttcacgtgttgcgactgctgcgcagcctggcccaagatcacgacagcaatagc
cagcagcgcagcagtttcgaactgcgccagatcactcaggatttcctcaagttgcgcatc
cgcggcggacacaactggagagctattcaagggctgggagagcgtcgacgtgctttggcc
gctgtcgtcctcacgtttttgattggcaaattaccgccgggttcacgcaacaaagacctg
ttagtggatactacgttcggcgaacttatgggcctgattgatctggatcttgagctgcgc
actagaatcccagagtcgcagcgccgcaaggccgttgagcacgtactgctgtacctgcat
aagcaagaagtgattacgctgaaccacggcatgacagtcatgcgtcgggctatgacgatt
gaagtcgaggggggaaagcgcaccggattcctgaaagatgattatcagcgtcttgatgag
cactaccgagaaaaacgtattcaggttcacgtcatgcgcgagtatgccgaggttgggctt
ggctcgatgggctatgccctggatctcgttcagcactatttcacactagccaaacaggag
ttcattcgccgctacttcgtagatcgcgaggaggtacttaagctagccacgagtgaggaa
tcttggcgtagcattgtcgagaagcttagtgctgctcagcggatcatcgtgtccgatgat
gatgatgtgaatcgcctgattctggctgggcccggctccggcaaaacgcgtgtgatcgtg
catcgaatcgcttacctgttgcgagttcgtcgcgttccggcgcgctgtatcgtggctttg
acgttcaaccggcatgcagcaaatgagatcaagcagcgcctgatcaagttggttggcgct
gatgcctttggggtcaacgtgatgacgtatcatcgcatggccatgcgcctgacgggcact
cgcttcgagcgaggtgaaacgcttgaagaagggcgattagcccaggtgatgggagaggct
gttgagttgcttgaaggcaagcgtcaggtagaaggggaggacgatctgcgcgagcaattg
atgcgaggctaccgctacatcctcgttgatgagtaccaggacattgatgacctacagtat
cggctcgtaagtgcgttggccgggcgtaagtctgaagaagaagggcgcttgtgcattttg
gcagtcggtgacgatgatcagaacatctacgcctggcgggatacgaataaccgctatata
gagcgctttcgcgatgagtattcggctacaaagaactatctggtcgacaactaccgttcc
agcggtcgcatcattgatgcggctaaccgggttattggtcgtaacccagatcgcctgaaa
aaggaccatccgattcagattgatactgttcgtcgcgcaatgccgaaaggcggtgactgg
gaaaccctcgacattgagcgggaggggcgcgtgcttcgcctcaaaatagacgctcagggc
cacgcacgggctaatctgcaagcccaggcagcgatgacagagttgcagcgcctgctcagt
ttggacagcgaggattggcatgggtgtgccgtgctagcccgcacccatcaaaacctgctg
ccccttcaggcgtggtgtgaagctcacggcgttccatattgtttggcagccgacaaggaa
ggtgtcttacctctcaccgctcaacgtggcttcgtgcaggctgttgaaatactaagagag
actaccgaaccgctgagtgcctccgagacatggacatatctaggtaagaggcagctcggg
ccagaatggtacgacatgttactcgtcgcctttgatcagctaacagccgagttcggacaa
tgtccgctaagtgctgagatcctgctcgattggctctatgactatttccgggagctgcgt
cagcaacctagaaagggtctctatctgggcactgtccactccgccaaaggcctggagttc
cgccacgtagtcgtgcttgacggcggctggtccacgcagcctgaaacgcttagcgatgag
cgtcgactctactacgtgggcatgactcgcgccgagcagactttaaccttgtgtgaatac
ccagaaggcaatcctttctgcagccaacttacggaagaggtcatggcgcgaaccttccaa
ggaaaataccttgcggagctggagaagcgttacctacaactctctttgaaggacattgat
cttgattatgctgggcgtcagaaccctacggcatcaatacacaaggtattggcagcgctt
gaacctggcgacatgctttcgtttaaagctcatgaagatagatatctgattcaggacgcc
aacggttatgttattggccgcacagcaaaatcattcagcctagatcttgatattgaggag
tgtgaagtggcggctgttttggttcggcgttctgaccggtgtgaagagtcgtttcgagct
tatcatcgttcgcaagagtgggagctagtcgtgccgagaatcgctggccgggtcgtaatg
agcgatacataa
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integrated database retrieval system
