Pseudomonas sp. KUIN-1: KUIN1_32010
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Entry
KUIN1_32010 CDS
T09878
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psku
Pseudomonas sp. KUIN-1
Pathway
psku03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KUIN1_32010 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psku03400
]
KUIN1_32010 (ligD)
Enzymes [BR:
psku01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KUIN1_32010 (ligD)
DNA repair and recombination proteins [BR:
psku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KUIN1_32010 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBN64011
LinkDB
All DBs
Position
complement(3758513..3761119)
Genome browser
AA seq
868 aa
AA seq
DB search
MAKPASEYTRKRNFDITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELEGTL
KSWAVPKGPSLDPTQKRLAVHVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDP
QKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLIKEKDDVARPAAEYDITHEQ
PQSVISGAHVGKQRGTSKKSGASAASSKAKAATPAAAKASTPAAKPARRKAKAAFPDALS
PQLATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMK
LRDSWFDGEVVVLDEQGLPDFQGLQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRR
DALKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVSKRNADWIKL
KCRLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLK
KLQRKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDV
VREDAQPAKVASQPPTTTAAPKARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQF
YQSIADWILPCLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALME
IDSVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVL
EELGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNR
VGKIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKR
LKDDPWAGYSNRRKITQKMWKQLGAKRP
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgccagtgaatacacccgcaagcgcaatttcgatatcacctccgagcct
gcggagagcaagcgtaagggcaaaggcaagtcgcagcctggcgcgctcggtttcgtgatc
cagaagcatgacgcacggaacctgcactacgactttcgactggagctggagggcacgctc
aagagctgggccgtgcccaaaggtccgagcctggaccccacgcaaaagcgtctggcagtg
catgtcgaagaccatccgctggactacgccggcttcgagggcagtatcccgcagggtcaa
tacggtggcggcgatgtgattgtctgggaccggggtgtctggcagccgcacggtgatccg
caaaagacctacgaggaaggcaaactcaagttcaccctggtcggcgagaaactcagcggt
gactgggcgctggtgcgtacccggctcaagggcagcggcagcaaggaacagtggctgctg
atcaaggaaaaggatgacgtcgcgcgacctgctgccgagtacgacatcacccatgagcag
ccgcaaagcgtgatcagtggagctcatgtcggcaagcaacgcggcacctcgaaaaagtcc
ggggccagcgccgcaagcagcaaagccaaggccgcgacacccgccgcagcaaaagcgtca
acacccgctgcaaagccggcgcgcaggaaagcgaaagcggcttttccggacgcgctttcg
ccgcaactggcgacgctggtggaggcgccgccagccggtgactggctgtacgagatcaaa
ttcgatggctaccgcatgctgactcgtattcagggcgacgatgtgcggctgttcacccgc
aacgggcatgactggaccgagcggctgccggaactggtcaaggcgctcaagggcatgaag
ctgcgcgacagctggttcgacggcgaagtggtggttctcgatgagcaggggctgcccgac
ttccagggcctgcagaatgcctttgacgcgggcaacagcaaggacattctgtattacctg
ttcgacatgccgtttctgagcgcggaggacctgcgtgaagtgccgctcgagcagcgtcgg
gatgccttgaaacaagttctcgacgcacagaaaagtcgcctgttgcgttactcggatgcc
tttcaggcaggccatcaggacattgtcgcgagtgctgcggcaatgggcctggaaggggtg
atcggcaagcgtgccggcagtgcctacgtcagcaagcgcaatgccgactggatcaagctc
aaatgtcgcttgcgacaggaattcgtggtcgtcggctatacggcgccgcagggcagccga
tcggcgttcggggccttgttgcttgcggtcaatgccggtgaggacgggttgatctatgcc
gggcgggtcggcaccgggttcactgaagtgagccttgagcaactgcataaacagctgaag
aagttgcagcgcaaggattcaccgttggccaaaaagctctccgcgtcccaggcgcgtggc
gtgcagtgggtggcgccgcaactggtctgcgaagccgagttcgcccagtggacccgcgaa
ggcatcgtgcgccaggctgcctttgtcgggctgcgtagcgacaagcccgccaaggacgtg
gtacgtgaagacgctcagcctgccaaagtggccagccagcccccaaccacaacggcagcg
cccaaggcacgcaaaaaggccgcgcagggaaaagttgatgtggcgggcaccggcatcagt
catccggaccgcgtcatcgacagcaagtccggcaccagcaagatcgaactggcgcagttt
taccagtccatcgccgactggattctgccctgcctgaacaagcgtcccgtggctctgctg
cgctgtccggagggcatcgacggtgagcagtttttccagaagcatgccgagcatctggcg
atcccgcacatcaggcaactggatcgtgccctggaccccgggcatgccgcgctgatggaa
atagattcggtgccggcactggtcggtgctgcacaaatgggcgccatcgagctgcatacc
tggggcgcgacgcgtgacagaatcgaaacgccggaccatttcgtgctggaccttgatccc
gatccggcactgccctggcgcagcatgatcgaggccacgcaaatggtgctcgccgtgctg
gaagaactggggctggaggctttcctcaagaccagcggtggcaagggcatgcacatcatt
gtgccgttggcgcgccaggcagactgggacacggtaaaggcgttcgccaaggccatcgcc
gagtttgccagccgtcagctgccggaacgcttcaccgccaccatggggccgaaaaaccgc
gtcggaaaaatcttcatcgattacctgcgcaacagccgcggcggcagcaccgtaaccgcc
tactcagtacgcgcccggccagggttgccggtctcggtgccgatcgcgctggatgagctg
gcgggtctgaagtcgtcggcacagtgggacatcaccaatcttgagcagcgtttgaagcgg
ctcaaggacgacccgtgggccggttacagcaaccggcgcaaaatcacgcagaagatgtgg
aagcaactgggtgcgaaacggccttga
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