Pseudomonas sp. KUIN-1: KUIN1_37560
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Entry
KUIN1_37560 CDS
T09878
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
psku
Pseudomonas sp. KUIN-1
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psku03009
]
KUIN1_37560 (srmB)
Enzymes [BR:
psku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KUIN1_37560 (srmB)
Ribosome biogenesis [BR:
psku03009
]
Prokaryotic type
rRNA helicases
KUIN1_37560 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBN64566
LinkDB
All DBs
Position
complement(4376032..4377393)
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AA seq
453 aa
AA seq
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MFFVEVAPVFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTA
AFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFK
VQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGE
CAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQ
VLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQG
GAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDW
NLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGP
TKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgtttttcgtcgaggtagcacccgtgttttccgaattcgccctgcacgaacgcctgctc
aaagctgtggccgagcttaaatttgtcgagcctacgcccgtgcaggcggccgccattccg
ctcgcactgcaagggcgcgacctgcgggtgactgcgcaaaccggtagcggcaagaccgcc
gcatttgtgctgccgatcctcaatcgtctgatcggcccggccaaggtccgtgtcgatatt
cgcgcggtgatcctgctgccgacccgtgagctggctcagcagacgctcaaggaagtcgag
cgcttctcgcagttcaccttcgtcaaggccggtttgatcaccggtggcgaggacttcaag
gttcaggctgccatgctgcgcaaggtgccggacattctgatcggcacgccgggtcgcctg
ctggagcagttgaacgcaggcaacctggacctcaagcacgttgaagtgctggtactggac
gaagccgaccgcatgctggacatgggcttctccgaagacgtcgagcgtctggccggcgaa
tgtgccggtcgcgagcagaccatgctgttctcggcgaccaccggcggcgctggcctgcgg
gaaatgatcggcaaggtgctcaaggatccgcagcacctgcaagtgaacagcgtcagcgag
ctggcttccggcacacgccaccagatcatcaccgccgaccacaacgtgcacaaagagcag
gttctcaactggctgctggccaacgagacttaccagaaagccattatcttcaccaatacc
aaggccatggccgaccgtctgtatggccgcctggtagcgctggaatacaaggcgttcgtg
ctgcacggcgacaaggaccagaaggaccgcaaggcggccatcgaccgtctcaagcagggc
ggcgcgaaaatcatggttgccaccgatgtggcggctcgtggccttgatgtcgaaggtctg
gacatggtgatcaacttcgacatgccacgcagcggcgacgactacgtccaccgcgtcggg
cgtaccggccgcgcgggcagcgacggtctggcgatctcgctgatctgtcatggcgactgg
aacctgatgtcgagcgtggagcgctatctcaagcagagcttcgagcgtcgcgtcatcaag
gaagtcaaaggcacctacggcgggccgaagaaggtcaaggcctccggcaaggcagtcggc
gtcaagaagaaaaagaccgacgccaagggcgacaagaagaaggtcgcggccaaagggccg
accaaacgcaagacggtcaaccgtcccaagtctgacctggtcagccaggacggcatggcc
ccgctgaaaaaacgcagcaccccggccccggctgccgagtga
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