Pseudomonas sp. KUIN-1: KUIN1_37950
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Entry
KUIN1_37950 CDS
T09878
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psku
Pseudomonas sp. KUIN-1
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psku03019
]
KUIN1_37950
Enzymes [BR:
psku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KUIN1_37950
Messenger RNA biogenesis [BR:
psku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KUIN1_37950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
APHB_HrpA
WHD_HA2
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BBN64605
LinkDB
All DBs
Position
complement(4430577..4434488)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDQLLKNLDHAMISERHRLRRQLHDLRKKPDEAKLAQWVARVQASCAQVTARR
ESVPAIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEEIGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLQRFSEHFNDAP
VIEVSGRTFPVDVWYRPLTSEQDEDGNSVEEDLTVDQAILATLDELAAFERSERKSPGDV
LVFLPGEREIRDAAEVLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGLCVRLYS
EEDFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPVDPRMGRMLLEAAKQGSLQEVLIVASAMSVQDVRERPPERQ
QAADQAHAQWKDADSDFAGMVNLWRGFEEQRQTLTASPLRKWCRRNFLNYLRLREWRDSH
RQLSLICRDLQLTVNKEPADYPKFHKAILSGLLSQIGQKTDEGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIDSDWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHFGPIDPVVSRELFIREGLVRGDILSRAKCLSANTRLLEQLDEL
EAKARRRDILADEDTLYSFYEARIPAEIHQTATFDSWYKTESQKNPQLLIMREEDVLARE
ASEVTAAQYPDTLRLGDLSLSLSYHFEPNHPSDGVTLRVPAPLLLSLPAERLEWLVPGLL
ESKCIALVRNLPKAVRKNFVPVPDFIKAALQRITFGEGSLPQALGRELLRMTGVRVSDEA
WAEAAQQLEGHLKMNLEIVDGGGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVQ
AKAFAAVAQKTQQNIAGLSMTVYPALVEEGGAVKEGRFSTQAEAEYQHRRALQRLLLQQL
AEPAKFLRNKLPGQTELALLHRELGRIDALIEDILLASLDSCVLEGEAELPRDGAGLLSL
AERKRADWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLSQAVALNDIKAQLSKLVYPGF
VRETPAVWLKELPRYLKAIEMRLEKLPAQVQKDRVWSIELAGLWAQYQARADKHAQEGKR
DPELALYRWWMEEYRVSLFAQQLGTKMPVSDKRLSKQWSQVES
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctctatcgaccaacttctgaaaaacctcgaccacgcgatgatc
agcgaacgtcatcgtctgcgccgtcagttgcacgatctgcgcaaaaaacccgacgaggcg
aagctggcgcagtgggttgcgcgggtgcaggcatcctgcgcgcaggtcacggcgcggcgc
gagagtgtgccggcgatccgttatgacgataacctgcccatcgcggccaagcgtgacgag
atcaaggaggcgctgctcaagcaccaggtgctgatcattgccggcgagaccggctccggg
aaaaccacccagttgccgaagatctgcctggaaatcggtcgcggtcagcacggtctgatc
ggtcatacccagccgcgccggatcgctgcgcgcagcgtggccagccgggttgccgaggaa
atcggcacgcccctcggtgcgctggtcggctatcaagtgcgtttcgaggaccagagcgac
agcaacaccctgatcaagctgatgaccgacgggattctgctggccgaaacccagcacgac
cgctttcttgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgatttcctgctgggttacctgaaaaccctgctgccgcgccgtccggacctgaaggtc
atcatcacctccgcgaccatcgacctgcagcgcttttccgagcacttcaacgatgcgccg
gtgatcgaagtgtccgggcgtaccttccccgtggacgtctggtatcgcccgctgaccagc
gagcaggatgaagacggcaacagcgtcgaagaggacctgaccgtcgatcaggcgattctg
gccacgctggacgaactggcggcctttgagcgcagcgagcgcaagagcccgggtgatgtg
ctggtgttcctgcccggcgagcgcgagatccgcgatgccgccgaggtgctgcgcaaggcg
caactcaagcacaccgagattctgccgctctacgcgcgcctctcgccggccgagcagcag
cgtatctttcaatcgcatcccggtcggcgtgtggtgctggctaccaacgtcgctgaaact
tcgctgaccgtgccgggcatccgctatgtgatcgacaccggtacggcgcgcatcagtcgc
tacagctatcgcgccaaggtccagcgcctgccgatcgaggcggtgtcgcaggccagtgcc
aaccagcgcaagggccgttgcgggcgggtcgagcccggcctgtgtgtgcgtctgtacagc
gaagaggatttcaacggtcggccggagtttaccgaccccgagatcctgcgcaccaacctg
gccgcagtcatcctgcagatgctgcacctgcgcctgggcgagatcaccgacttcccgttc
atcgagccgccggacggcaaggcgatcagcgacggtttcaacctgttgcaggagctttcg
gcggtcaatcgcgaaaatcagctgaccccgctgggccgccaactggcgcgtctgccggtg
gacccgcgcatgggccgcatgctgctggaagcggcgaagcagggcagtctgcaggaagtg
ctgatcgtcgccagcgccatgtcggtacaggacgtgcgcgagcgcccgcccgagcgtcag
caggctgcggatcaggcccacgcgcaatggaaggacgccgactcggacttcgccgggatg
gtcaatctatggcgcggcttcgaagagcagcgccagaccctgactgccagcccgctgcgt
aaatggtgccgacgcaatttcctgaattacctgcgcctgcgtgaatggcgcgattcccat
cggcaattgagcctgatctgtcgcgacctgcaactgacggtcaacaaggagccggccgat
tacccgaagtttcacaaggccattctttccggcctgctgagtcagatcgggcaaaagacc
gacgagggcgattacctcggcgcacggcagcggcgcttctggattcacccgtcctccggg
ttgggcaagaaacgtccgcagtggttgatgactgccgagctggtagagaccaccaagctg
tacgcgcgcatggttgccaagattgattcggactggatcgagccgctggccggccacctg
atcaagaaaaatcacttcgagccgcactgggagaagaagcgcggacaggtcgtggcgttc
gaacagatcacgctgttcggcctgatcgtggtgggccgtcgcccggtgcatttcgggccg
atcgacccggtggtttcgcgcgagctgttcattcgtgaaggcctggtgcgtggcgatatc
ctgtcgcgggccaagtgtctgagcgccaatacccgtttgctggaacagctcgacgaactg
gaagccaaggctcggcgtcgcgatattctggctgacgaagacaccttgtacagcttctat
gaagcacgcattccggccgagattcatcagacggccacgttcgacagctggtacaagacc
gaaagccagaagaatccgcagttgctgatcatgcgtgaagaggacgtgctggcccgcgag
gccagcgaagtcaccgccgcgcaatatccggacaccttgcgtctgggcgacctgagcctg
tcactgagctaccacttcgaacccaatcacccgagtgacggcgtgaccttgcgtgttccc
gcgccgttgttgctgtcgctgcctgccgaacgtcttgagtggctggtgccggggttgctc
gagagcaaatgcatcgcgctggtccgcaacctgcccaaggcggtacgcaagaactttgtg
ccggtcccggatttcatcaaggcggcgttgcagcgcatcaccttcggcgagggctcgttg
cctcaggcgctgggccgtgaactgctgcgcatgaccggtgtacgggtcagcgacgaagcc
tgggccgaggcggcacagcagcttgaaggccatctgaagatgaacctggaaatcgtcgat
ggcggcggcaagtttctcggtgagggacgtgatctggccgagctgaccgcgcgcttcgcc
gaggcgagccaggccgcgctggccgtgccgcaaaccgcgaagagccagcaaccggtgcag
gccaaggcctttgcagcagtggcgcagaaaacccagcagaacatcgccgggctgtcgatg
acggtttatccggcgctggtcgaagagggcggcgcggtcaaggaaggccggttctcgacc
caggccgaggccgagtatcagcatcgtcgtgccttgcagcgtttgctgttgcagcagctg
gccgaacccgccaagtttctgcgcaacaaattgccggggcagaccgagctggccttgctg
catcgcgaactggggcgcatcgatgcgttgatcgaagacatcctgctggccagcctcgac
agttgcgtgctggaaggtgaggccgaattgccgcgcgacggtgccggtctgctgtcactg
gctgaacgcaagcgcgccgactggaccgagcatgccgagcggctcgcgaagctgacgctg
gaaatcctcaagctgtggcacggtctgcaaaagcgcttcaaaggcaagatcgacctgtcc
caggccgttgcactcaacgacatcaaggcgcaactgagcaagctggtgtaccccggattc
gttcgcgagaccccggcggtatggctcaaggaactgccgcgttacctcaaggccatcgag
atgcgtctggaaaaactcccggctcaggtgcagaaggatcgggtgtggagcatcgagctt
gcaggtctgtgggcgcaataccaggcgcgcgccgacaagcacgctcaagagggcaagcgc
gacccggaactggccctgtaccgctggtggatggaggaataccgcgtctcgctgttcgcc
cagcaactgggcacaaaaatgccggtgtcggacaaacggttgagcaagcagtggagtcag
gtggagagctga
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