Pseudomonas sp. KUIN-1: KUIN1_38040
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Entry
KUIN1_38040 CDS
T09878
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
psku
Pseudomonas sp. KUIN-1
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psku03021
]
KUIN1_38040 (rapA)
Transcription machinery [BR:
psku03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
KUIN1_38040 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBN64614
LinkDB
All DBs
Position
4442853..4445780
Genome browser
AA seq
975 aa
AA seq
DB search
MSFFTPPLAFGARSVNILSFFKRETGSMAQQYQPGQRWISDSEAELGLGTVLAQDGRLLT
VLYPATGETRQYALRNAPLTRVRFSPGDVITHFENWKMTVREVDDVDGLLVYHGLNAQNE
LVTLPETQLSNFIQFRLATDRLFAGQIDQLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQ
PIAHQLHIAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRASRVLILVPENLQH
QWLVEMRRRFNLQVALFDAERFMESDAGNPFEDTQLALVALEWLVEDEKAQDALFAAGWD
LMVVDEAHHLVWHEDKASREYSLVEQLAEVIAGVLLLTATPEQLGQDSHFARLRLLDPNR
FHDLKAFRAESENYRPVAQAVQELLDKGKLSAAAQETIHGFLGAEGDSLLAAVNTGDEEA
KSRLIRELLDRHGTGRVLFRNTRAAVQGFPERKLHQYPLPCPVEYLELPVGEHADLYPEV
SFQSHSDVSEEERWWRFDPRIDWLIDTLKMLKRVKVLVICAHAETAMDLEDALRVRSGIP
ATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLL
EQRIGRLDRIGQKHTIELHVPFLETSPQARLFQWYHEALNAFLNTCPTGNALQHQFGPRL
LPLLESGDDDEWQTLINEARSERERLESELHTGRDRLLELNSGGAGEGEALVEAILDQDD
QFSLPIYMETLFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQALSR
EDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELIYVSEVVAPRSLQ
LGRYLPPAALRCLLDPNGNDLASRVSFNTLNDQLESVPRASANKFIQAQRDQLTPRINAG
EEKIMPKHAERVAEAQRRLAADTEEELARLTALQAVNPTVRDSELVALRTQREQGLAMLE
KAALRLEAIRVLVAG
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgagttttttcacgccgcctttggccttcggggcgcgttccgttaacatactcagcttt
ttcaagcgggagacaggcagcatggcgcagcagtatcaaccggggcaacgctggattagt
gacagcgaagccgagctgggtttgggcaccgttctggcacaggacggccgcttgttgacc
gtgctctatccggccactggcgaaacacgtcagtacgcactgcgtaacgcgccgctgacc
cgcgtgcgcttctcccctggcgacgtgatcacgcacttcgaaaactggaaaatgaccgtt
cgcgaagtcgacgatgtcgatggcctgctggtctaccacggcctgaacgcacagaacgaa
ctggtcacgctgccggaaacccagttgtcgaacttcatccagttccgcctggcgaccgac
cgtctgttcgccggccagatcgaccagttgtcgtggttctcgctgcgctacaacacgctc
gagcataccagccgccaattgcagtcctcgctctggggcctgggtggcgtgcgcgcacag
cctatcgcccaccagttgcacatcgctcgtgaagttgcagatcgcatcgcgccacgcgtt
ctgctggccgacgaagtgggcctgggtaaaaccatcgaagccggcctggtgatccatcgc
caactgctgtcgggccgcgccagccgcgtactgatcctggtcccggaaaacctccagcac
cagtggctggtggaaatgcgtcgccgcttcaacctgcaggtcgcactgttcgacgccgag
cgcttcatggaaagcgatgccggcaacccgttcgaagatacccagctcgcgctggttgcc
ctggaatggctggtggaagacgaaaaagcccaggacgccctgtttgcggcaggctgggac
ctgatggtggttgacgaagcgcaccacctggtctggcacgaagacaaggccagccgcgaa
tattcgctggtcgaacagctggccgaagtcattgctggcgtactgctgctgaccgcgacg
ccggaacaactgggccaggacagccactttgcccgtctgcgcctgctggacccgaaccgt
ttccacgacctcaaggccttccgtgccgagagcgagaactatcgcccggtggctcaggcc
gttcaggagctgctcgacaagggcaagctgtccgcagcagcacaagagaccattcacggc
ttcctgggtgccgaaggcgattcgctgctggccgcggtgaataccggcgacgaagaagcc
aaatcgcgtctgattcgcgaactgctcgaccgtcatggcaccggccgcgtgctgttccgc
aacacccgcgccgcggtgcagggcttcccggagcgcaagctgcatcaatacccgctgccc
tgccctgtcgaatacctcgaattgccggtcggcgagcacgccgatctttacccggaagtc
agcttccagtcgcattcggacgtcagtgaagaagagcgctggtggcgcttcgacccacgc
atcgactggctgatcgataccctgaaaatgctcaagcgcgtcaaggtgctggtgatctgt
gcccacgccgaaaccgccatggacctggaagacgcgctgcgtgtgcgttccggcattcct
gccacggtgttccacgaaggcatgaacattctcgagcgcgaccgtgccgcggcctatttt
gcggacgaagagttcggcgcccaggtgctgatctgttcggaaatcggcagcgaaggccgc
aacttccagttctcccaccatctggtcctgttcgatctgccgtcgcacccggacttgctg
gagcagcgtatcgggcgtctggaccggatcggccagaagcacaccatcgagctgcacgtg
cctttcctggaaaccagtccgcaggcccgcctgttccagtggtatcacgaagcgctcaac
gcgttcctcaatacctgcccgaccggcaacgccctgcagcatcagttcggcccgcgcctg
ctgccgctgctggaaagcggtgacgacgacgagtggcaaaccctgatcaatgaagcccgc
agcgaacgcgagcgtctggaaagcgaactgcacaccggtcgcgaccgcttgctggagctc
aattccggcggcgctggcgaaggtgaagcgctggtcgaagcaatcctcgatcaggacgat
cagttcagcctgccgatctacatggaaaccctgttcgacgcgtttggcatcgacagcgag
gaccattcggaaaacgccctgatcctcaaaccgagtgaaaagatgctcgacgccagcttc
ccgctgggcgacgacgaaggcgtgaccattacctacgaccgcaatcaggcgctgtcccgc
gaggatatgcagttcatcacctgggaacacccgatggtgcaaggcggcatggacctggtg
ctgtccggttcgatgggcaacaccgccgtggcactgatcaagaacaaggcgctcaagccg
ggcaccgttctgctcgaactgatctacgtcagcgaagtggttgcgcctcgttcactgcag
ctgggacgttatctgccgcctgccgcgctgcgctgcctgctcgacccgaatggcaacgat
ctggccagccgtgtgtcgttcaacacgctcaatgatcagctcgaaagcgtgccccgtgcc
agcgccaacaagttcatccaggcccaacgtgaccaactgaccccgaggatcaacgcgggc
gaagagaaaatcatgccgaaacacgccgagcgcgtcgccgaagcgcagcgtcgcctggca
gccgacaccgaagaagaactggcccgcctgacggcattgcaagcggtcaacccgaccgtg
cgcgacagtgaactggtggctctgcgcactcaacgtgaacagggtctggccatgcttgaa
aaagcggccctgcgtctggaagcgatccgggtactggtcgcaggctga
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