Pseudomonas sp. KUIN-1: KUIN1_41990
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Entry
KUIN1_41990 CDS
T09878
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psku
Pseudomonas sp. KUIN-1
Pathway
psku03420
Nucleotide excision repair
psku03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KUIN1_41990
03430 Mismatch repair
KUIN1_41990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psku03400
]
KUIN1_41990
Enzymes [BR:
psku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUIN1_41990
DNA repair and recombination proteins [BR:
psku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KUIN1_41990
MMR (mismatch excision repair)
Other MMR factors
KUIN1_41990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
UvrD_C
Herpes_ori_bp
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
BBN65009
LinkDB
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Position
complement(4884361..4886292)
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AA seq
643 aa
AA seq
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MSRRIDSPDTDADREIHACIAETPPQPFVVRAGAGSGKTTSLIKALDWVISEHGASMRAK
KQKVACITYTDLAAKEILADVNDDPLVHVSTIHSFYWSITKTFQADIKVWLQNDIRRRIT
ELEEEFKNYSSRVRQTTRDRNKADQERYARSLETIAGVKTFNYGVGSDYGNGVLGHEDIL
QLADFLLQNRPLFRRVVALNFPFVFIDESQDTFPSVVKSFKEVEAQMRRKFCLGFFGDPM
QAIFMRGSGDIPLEDHWRAITKPENFRCAKQILDVANAVRAQGDGMEQVRGLHERVDGEL
KPVEGSARMFVLPNTLNRIEALARIRAWSAVTNNDEGWTTPEIALKILVIVHRMAANRLG
FGGIYSALNDKTSEGMKQGMQDGTGWPVRPFLSFALPIVAAVKAGNEFAAMNLLRKFSPR
LAPGALTGRRAAAVLRELHAAMSRLVAMLDEAGTTIGDIALHLCDTGLFEFDDRYARVLG
FVRDVADAAQEPEAADAVPAEGLSSDAAMAKFFKCSAQELWPYERYVSEGSPYATQHGVK
GAQFERVMVVMDEEESDYRTYNYERVFASAEARAADRARALGGDENTWSRTLRLLYVCCT
RAQRGLVLTFFVADPTTTLENVVASGILPRSAVFTQEVLAGWP
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacgaattgatagcccagacaccgacgccgaccgcgagatccacgcgtgtatt
gccgagacccccccgcagccgttcgtggtccgcgccggtgcaggttccggcaagaccacc
tcccttatcaaggcgctggactgggtgatctcagagcacggcgccagcatgcgggcgaag
aagcagaaggtcgcctgcatcacatatacggacctcgccgccaaagaaatcttggcggat
gtcaacgacgacccgctggttcatgtctcgaccatccacagcttctactggtctattacc
aagacgtttcaggcagacattaaggtttggctacagaacgacatccgcaggcggatcacc
gaactggaagaagaattcaagaactacagctcgcgtgtccggcagactacacgcgacagg
aacaaggctgaccaagagcgttatgcccgaagccttgagactattgctggcgtcaagact
ttcaactacggcgtgggcagtgactacgggaacggcgtcctcggccacgaggacatcctt
cagctcgccgatttcctgctgcaaaatcgcccgctgttccgacgggtcgtagcgctgaac
ttcccgtttgtgttcattgacgagagtcaggacacgttcccgagcgtagtgaagtccttc
aaggaagtggaagcccagatgcggcgcaagttctgtctcggtttttttggcgacccgatg
caggcgattttcatgagagggtcgggggacatcccgcttgaggaccattggcgggctatc
acgaaaccagagaattttcgctgtgcgaagcagatccttgacgttgccaacgccgtgcgc
gcgcagggcgacggcatggagcaagtccgcgggctgcacgaaagggtcgatggagaactc
aagccggtggagggctcggcccggatgttcgtactgccgaacacgctgaaccgaattgag
gccttggcgagaatccgggcgtggagcgcggtgacgaacaacgacgagggttggacgacc
ccagaaatcgcgctcaagattcttgtcatcgtgcaccgcatggccgcaaaccggctcggc
ttcggtggcatctactcggcgctgaacgataagacatcggagggcatgaagcaggggatg
caggatggcaccggctggcccgttcgaccgttcctaagttttgcgctaccgatcgttgct
gccgtgaaagccggcaacgagttcgcggcgatgaacctgctccggaagttcagcccgcgt
ctggcgccaggggctcttaccggccgacgtgccgcggctgtattgcgagagctgcacgct
gctatgtctagacttgtcgccatgctggacgaggcagggaccaccattggtgacatagca
ctccatctctgtgacacggggcttttcgagttcgacgatcgctatgcgcgtgttctcgga
tttgtcagggatgttgcagacgctgcccaggagcccgaggctgctgatgcagttccggcc
gaaggactatcctcagatgcggcaatggcaaagttcttcaagtgctcggcacaagagctt
tggccctatgagcgctatgtctcagaagggtctccctatgctacacagcacggtgtgaag
ggagcgcagttcgaacgcgtcatggtggtgatggacgaggaagaaagcgactaccgaacg
tacaactacgaacgtgtcttcgcgagcgctgaggcccgtgctgcagatcgtgcacgagca
ctaggcggtgatgaaaacacttggagccgaacgctgcgactgctttacgtctgctgcact
cgcgcccagcgggggctggtactaacgttctttgtcgccgatccgacgaccaccttggaa
aatgtcgtggcgagcgggatcttgccgcgaagcgcagtctttacacaggaagttttagct
ggatggccatag
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