Pseudomonas sp. KUIN-1: KUIN1_45560
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Entry
KUIN1_45560 CDS
T09878
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psku
Pseudomonas sp. KUIN-1
Pathway
psku03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KUIN1_45560 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psku03021
]
KUIN1_45560 (rpoC)
03400 DNA repair and recombination proteins [BR:
psku03400
]
KUIN1_45560 (rpoC)
Enzymes [BR:
psku01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KUIN1_45560 (rpoC)
Transcription machinery [BR:
psku03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KUIN1_45560 (rpoC)
DNA repair and recombination proteins [BR:
psku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KUIN1_45560 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
BBN65366
LinkDB
All DBs
Position
complement(5298201..5302400)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKERVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPTR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgcaatc
cgtatcggacttgcatcgcctgagatgatccgctcttggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgccaag
atctttggcccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggtgtcatctgcgaaaagtgcggtgttgaagtagcactggccaaggttcgtcgcgag
cgcatggctcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggtttgctgatggacatgaccctgcgtgatatcgaacgtgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctcgaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctattgatctggagcacgaaattggccgt
ctgcgtgaagaaattccgcaaaccaattccgagaccaaaatcaagaagctgtccaagcgt
ctgaaattgatggaagccttccagggttccggcaaccttcctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccgcttgacggtggccgtttc
gcgacgtccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtccgctcccgatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgcactgctcgacaacggtcgtcgcggtcgcgcgatcacgggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggcctggctacgaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtctgggacgttctcgctgaggtgattcgcgaacacccg
gtgcttctgaaccgtgcgccgacacttcaccgtctgggcatccaggcgtttgaaccggta
ctgatcgaaggtaaggccattcagctgcacccattggtttgtgctgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgcctctgacgctggaagctcagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtactgggtctgtactacatgactcgcgaagcgatcaacgcc
aagggcgaaggtcgtgtatttgcggacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcggctctgcacgccaaggtcaaggtgcgtatccacgaaacggtcaacgaccgtgat
ggtggcagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggtggttccggccggcctgtcctacgacgtcgtcaaccagccaatgaagaagaaagcg
atctccaagctgatcaaccagtgctatcgcgtggtcggcctgaaagagaccgttattttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttcgggtgtttccatcggc
gttaacgacttcgttatccctgatgaaaaagctcgcatcatcgacgcggccaccgaagaa
gttaaagagatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtaatcgacctttggtccaaggcgaacgacgaagtctcgaaagcgatgatgtcgaac
ctgtccaaagaacgcgttatcgaccgtcacggcgtcgaagttgatcaggaatccttcaac
tcgatgtacatgatggctgactccggggcgcgtggttctgctgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagcctgacggttccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctctactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaaccgctaactccggttatctgacacgccgtctg
gtagacgtcgctcaggatctggtggttaccgaggttgattgcggtaccgagcacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgctgggtgagcgcgtattg
ggtcgagtcattgcccgtgacgtattcaagccgggcacggaagatgtcatcgtccctgct
ggcacgctggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagta
atcgttcgttcgccaatcagctgtgaaacccgctatggcatctgcgccaagtgctacggt
cgcgacctggcacgcggtcaccaggtcaacatcggtgaagctgtcggcgtaatcgctgca
cagtcgatcggtgagccgggtactcagctgacaatgcgtacgttccacatcggtggtgcg
gcaagccggacctcggcagccgatagcgttcaggtgaagaatggcggtactgtccgcctg
cacaacctgaagcacgtcgagcgtgttgacggtcacctggttgcggtatcccgctccggt
gaactggcaatcgcagatgacttcggtcgtgagcgtgagcgttacaagctgccatacggt
gcagtgatttcggtgaaggaaggcgacaaggtcgacgctggctctatcgtggccaagtgg
gatccgcacactcacccaatcgtcaccgagatgaaaggtactgttacctacgtaggcatg
gaagaaggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gtgctcgacgccaaagatcgcccggctgccggcaaggacatccgtcctgctgtgaagatg
gttggtctggatggcaaggatctgctgctgccaggtactgacgtaccggcccagtacttc
ctgccggctaacgcccttgttggtgttgctgacggtgcgcagatcgcgatcggtgatgtt
atcgctcgtattccgcaggaaacgtcgaagactcgtgacatcaccggtggtttgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccatcgcattcggtaaagagaccaaaggcaagcgccgtctggtcatcaccccgaac
gacggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgagcaagtgaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtcaacgagattcaggacgta
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagacgattctgcgtcagatg
ctgcgtaaggttgaaattgccgagtctggcgattccagtttcatcaagggcgaccagatg
gagctgactcacgtactggtagaaaacgagcgtctgagcacggaagacaagtttgtttcc
aagttcactcgcgtgttgctgggtatcaccaaggcatcgctgtctaccgagtcgttcatc
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcggctgtgaccggcaag
cgcgattacctgcgcggcctgaaggaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgtcgtcgtgaaatggacaaaccgacccgt
gtcagcgcgagcgaagtagaagcggctctgacggaagcgttgaactccagcggtaattga
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integrated database retrieval system
