Pseudomonas sp. KUIN-1: KUIN1_49940
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Entry
KUIN1_49940 CDS
T09878
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psku
Pseudomonas sp. KUIN-1
Pathway
psku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUIN1_49940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psku03019
]
KUIN1_49940
03400 DNA repair and recombination proteins [BR:
psku03400
]
KUIN1_49940
Enzymes [BR:
psku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUIN1_49940
Messenger RNA biogenesis [BR:
psku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KUIN1_49940
DNA repair and recombination proteins [BR:
psku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KUIN1_49940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBN65804
LinkDB
All DBs
Position
complement(5784044..5785978)
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AA seq
644 aa
AA seq
DB search
MHQRLEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVS
PLLALIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFR
NFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQVIIDM
QDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVDWLNERRGQPTIVYVTLQKTAE
HIAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIARVLEDLL
GARHDGQWEFLLGPLADLSNIRQLPLKTLLVQLELRGIIAPRYAYFAEYRFKFLLQPQDL
MARFEGERRGFVQALIDTSNRARTWATVDFQAMYQQYGAERGRVVKALDYFQEKGWIELE
SKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLDVFASDQCLTHRLARYF
GDHNAPERCGHCSVCLGEVAHLPEPPALEPLANRDFQQLCSEFIHKHQNYTGQPPSADCL
TRFLCGISVPLFTRLKARATTGFAVLEDYPYAQVRTWVQAMAGN
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcgtctcgaacaggtattcggctacacacagttccggccggggcaggaggct
gccatcagtgcggtactggccggacgctcggctgcggcgatctttccgactggctcgggc
aagtcgctatgttaccaattgcccgccctgatgttgccgcatttgacgctggtggtgtcg
ccgttgctggcgctgattcaggatcagcttgccttcctgcaccgccatggcatatcggcg
gcgagcattgattcggcgcaaagccgcgacgagatcgctgacgtgatggcacgcgcacgt
tccggcgagctgaagattctgatgatctcggtcgagcgcctgaagaacgagcgtttccgc
aatttcatcgcccaagtgccgatttccttgctggtggtcgacgaagcgcactgcatctcg
gagtgggggcataacttccgccccgactacctgaagctgccggactaccagcgcgaattc
aatattccccagacattgctgctgaccgccacggcgaccccgcaagtcatcatcgacatg
caggacaaattcgccatcgcccccgaggatgtcatcaccaccggtttctaccgcgccaac
ctgcacctgtgggtcaagccggtcagcggccgtgacaaacgacgccggctggtggattgg
ctcaacgagcgtcgcgggcagccgaccatcgtttacgtgaccctgcaaaagacagccgaa
catatcgccgcgcacctggaacagaatggcctgcccgccagcgcctaccatgccgggctg
cccaacgatcagcgcgagtcgatccagaagcagttcatgggcggccatttgaactgcatc
gtggcaaccatcgcgttcgggatgggcatcgacaagagcgatatccgcaacgtggtgcat
ttcgacctgccgaaatccatcgagaactacagccaggaaatcggtcgggcagggcgtgat
ggtgctgcttcggattgtctggtgctggccaaccgcgacagcctcaacgtgctggagaac
ttcgtgtatggcgatacgccggagcgcgaggggattgcccgtgtgttggaagacttgctc
ggggcgcgccatgacgggcagtgggagtttctgctggggccgctcgccgacctcagcaac
attcgtcaattgccgctgaagaccctgctggtgcaactggaactgcgcgggatcattgcg
ccgcgctacgcgtattttgccgagtaccgcttcaagtttctgctccagccgcaagacctg
atggcgcgtttcgaaggggagcgacgcgggttcgttcaggccctgatcgacacctcaaac
cgggcacgcacctgggccaccgtcgatttccaggcgatgtaccagcaatacggcgccgag
cgcgggcgggtggtcaaggcgctggattactttcaggaaaaaggctggatcgagcttgaa
agcaaacagatgaccgaggtctacagcctgttgcgcagcgactttgatgcacaggccctg
agcatcgaattgcacgattatttcgctcatcacgaagccactgaagtggcgcgcattcac
accatgctggacgtgttcgccagtgaccagtgcctgacccatcgcctggcgcggtacttt
ggtgaccacaatgcgcctgagcgctgtgggcattgttcagtgtgcctgggcgaagtcgcc
cacctgcccgaaccacccgcgctggagcccttggcaaatcgggactttcagcaactgtgc
agcgagtttatccacaagcaccagaactacaccggccagccgcccagcgccgactgcctg
acgcgttttctatgcggtatcagcgtgccgctgttcaccaggctcaaagcccgcgccacc
accgggtttgcggtgctggaggactatccgtacgcacaggtcaggacgtgggtgcaggcg
atggctggcaactga
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