Phocoenobacter skyensis: A6B44_00645
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Entry
A6B44_00645 CDS
T06668
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psky
Phocoenobacter skyensis
Pathway
psky03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psky00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A6B44_00645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psky03400
]
A6B44_00645
Enzymes [BR:
psky01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A6B44_00645
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A6B44_00645
DNA repair and recombination proteins [BR:
psky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A6B44_00645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DoxA
MCR
Motif
Other DBs
NCBI-ProteinID:
QLB21802
LinkDB
All DBs
Position
144646..145458
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AA seq
270 aa
AA seq
DB search
MPELPEVETSVRGVSPYLVGKTIKEIIIRQKQLRWLVSDELTEMQNAQITAISRRAKYLI
IHTTKGEIIIHLGMSGSLSILEKETKEVGKHDHVDLITQDGLVLRYNDPRRFGAWLWAER
ADQLSILQKLGLEPLSVEFNGDYLYKKSINRKVAVKKFIMDNAVVVGVGNIYACESLFLA
KILPERLACTLTKSQADTLVTIIKQVLANAIEQGGTTLKDFVQPDGKPGYFAQVLQVYGR
KGEECNQCHNLIKTKIIGQRNTFYCDYCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattacctgaagttgaaaccagtgtgcgtggagtatctccttatctcgtggga
aaaaccataaaagagattattattcgccaaaagcaactgcgttggctagtcagtgatgaa
ttaaccgaaatgcaaaacgcccaaattaccgcaatttcacgccgagccaaatatctgatt
attcataccacaaagggtgagattattattcatcttggaatgtcaggttcattaagtatt
ttagaaaaagaaacaaaagaagtgggtaagcacgatcatgttgatctgatcacgcaagat
ggtcttgttttacgctataacgacccacgccgatttggtgcgtggctatgggctgagcga
gcggatcaattatcaattttgcaaaaacttggattagaacccctttcagtagaatttaat
ggcgattacttatataagaagagtataaatagaaaagtggcggttaaaaagttcataatg
gataatgcggttgtggttggcgtgggaaatatttatgcgtgcgaaagtttatttctcgca
aaaattctgcctgagcgattagcttgcaccttaacaaagtcacaagctgatacattagtg
acaataattaagcaagtattagccaatgcgattgagcaaggtggtacaacattaaaagat
tttgtgcaaccagatggcaaaccaggttattttgcccaagttctacaggtttatgggcgt
aaaggagaagaatgtaatcagtgccacaatctaattaaaacaaaaataatagggcaacga
aatacattttattgtgattattgtcaaaaataa
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