Phocoenobacter skyensis: A6B44_02420
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Entry
A6B44_02420 CDS
T06668
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
psky
Phocoenobacter skyensis
Brite
KEGG Orthology (KO) [BR:
psky00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psky03016
]
A6B44_02420
Enzymes [BR:
psky01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A6B44_02420
Transfer RNA biogenesis [BR:
psky03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A6B44_02420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Arm-DNA-bind_3
Motif
Other DBs
NCBI-ProteinID:
QLB22109
LinkDB
All DBs
Position
complement(527089..529071)
Genome browser
AA seq
660 aa
AA seq
DB search
MFQDNPLLAQLKQQMLANKTFVEGFVKATDKSYGFLECDKKSYFIPPQEMKKVMHGDKVK
ASVVVDGDKERVDIEELIEPMLTRFVARVKFNREGRLQLAVDHPNVKPLISANVNNKKIT
QKLQENDWVVAELKTHPLRDDRFLFAQVTQFICEAEDHYAPWWVSLVRHEQPREAVKGLE
SYELQDEIERKDLTDLDFTTIDSGTTKDMDDALCIEPILENDTQTGWHLMVAIADPTAYI
PQNSSLEKEARQRCFTNYLPGFNIPMLPRELSDDLCSLVADEKRPALVGEIITDLEGNVT
AETIFTLAWVKSKAKLAYDKVSDYLEQQENAWQPENEVIKQQIDWLHQFTQVRMQWREKN
ALIFKEQGDYAFELNEQGDVVDIHLEPRRIANQMIEEAMIIANIEAGKYLEKNAKTGIFN
THLGFDPKNYKLAKEFLIATLSTPENNEELEARYSVERLATLEDYCEMRRDIDQHDEKFL
ELRLRRYLTFAEFKNQAAPHFGLGITHYATWTSPIRKYGDMVNHRLIKQTLAQQPIQPIE
EDILVRLQEARKQNRMVERDISDWLYARYLEPMVEKNMEFDAEISDVSRGGLRVKVIENG
AMIFVPNSTLHPNKDEMNFRQEELALYIKDEKTYQVGQSVKVKLTQVRMETRSIIGNIVQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataacccccttttagcacaactaaaacaacaaatgctcgctaataaaacc
tttgtagaaggttttgtaaaagccactgataaaagttatggttttttagaatgcgataaa
aaaagttactttatcccaccgcaagaaatgaaaaaagtaatgcacggagataaagtaaaa
gcctctgttgtggttgatggtgataaggaacgagtggatattgaagaactaattgaacca
atgttgacacgttttgtggcaagggttaaatttaatcgtgaggggcgtttacaacttgcg
gttgatcatccaaatgttaaaccgctaatctctgctaatgtgaataacaaaaaaatcaca
caaaaattacaggaaaatgactgggtggttgcagaattaaaaacacacccattacgagat
gatcgctttttatttgcccaagttacccaatttatttgtgaagcagaagatcattacgct
ccttggtgggtaagtcttgttcgtcacgaacagcctcgagaagcagtaaaagggttagaa
agttatgagttgcaagatgaaattgaacgtaaagatttaacggatttagattttaccact
attgattcaggaacaaccaaagatatggacgatgcattgtgtattgagccaattttagaa
aatgatacccaaacaggctggcatttaatggtagcgattgccgatccaaccgcttatatc
ccacaaaattcaagccttgaaaaagaagctcgccaacgttgttttaccaattatttacca
ggttttaatattccaatgctacctcgtgaactttctgatgatttatgttcattggttgcg
gatgaaaaacgtcctgcattagtgggcgaaattattactgacttagaaggaaatgtcaca
gcagaaaccatctttacccttgcgtgggtgaaatcaaaagcaaaattagcttatgacaaa
gtatccgattatttagaacagcaagaaaatgcgtggcaacctgaaaatgaagtgattaaa
caacaaattgattggttacaccaatttacccaagtaagaatgcagtggcgtgaaaaaaat
gccttaattttcaaagagcagggtgattatgcctttgaattaaatgaacagggagatgtg
gttgatattcatcttgagcctcgccgaattgccaatcaaatgattgaagaagcaatgatt
atcgccaatattgaagcgggtaaatatttagaaaaaaatgcaaaaacagggattttcaac
acccatttaggttttgatcctaaaaattataaacttgccaaagagtttttaattgcaacc
ttaagtacacctgaaaataacgaagaattagaagctcgttatagtgttgagcgtttagcc
acccttgaggactattgtgaaatgcgtcgtgacattgatcaacacgatgagaaattttta
gaattacgcttacgtcgttatctcactttcgcagaatttaaaaatcaagctgcaccacat
ttcggtttagggattacccattatgcgacttggacatcaccaatcagaaaatacggcgat
atggtgaatcatcgtttaattaaacaaacccttgcacaacaaccaatacaacctatagaa
gaagatattttagttcgtttacaagaagcccgtaaacaaaaccgaatggttgaacgagat
atttcagattggttatatgcccgttatcttgaaccaatggttgagaaaaatatggaattt
gatgcagaaatcagtgatgtttctcgtggtggattgcgtgttaaagtgattgaaaatggt
gcgatgatttttgtgccaaactccacattgcatccaaataaagatgaaatgaacttccga
caagaagagctagccctttatattaaagatgaaaaaacttaccaagttgggcaaagtgtt
aaagtgaaattaacccaagttcgaatggaaaccagaagtatcattggaaatattgttcag
taa
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