Phocoenobacter skyensis: A6B44_09215
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Entry
A6B44_09215 CDS
T06668
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psky
Phocoenobacter skyensis
Pathway
psky03420
Nucleotide excision repair
psky03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psky00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A6B44_09215
03430 Mismatch repair
A6B44_09215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psky03400
]
A6B44_09215
Enzymes [BR:
psky01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6B44_09215
DNA repair and recombination proteins [BR:
psky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6B44_09215
MMR (mismatch excision repair)
Other MMR factors
A6B44_09215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QLB23372
LinkDB
All DBs
Position
1929393..1931579
Genome browser
AA seq
728 aa
AA seq
DB search
MDFSLLLDGLNEKQREAVAAPVGNYLVLAGAGSGKTRVLTHRIAWLIGVENIPESNILAV
TFTNKAATEMRHRIEHTLSSSNHRLFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSE
DQHRLIKRLLKLHHIDEKNFPPKQVMWYINGKKDKGLRPYQIDHQNDSNEKKLVEIYQIY
QDACNRAGLLDFAELLIRAYELFKDKPLILKRYQERFPHILIDEFQDTNQIQYLWIRLLA
GQSGNVIVVGDDDQSIYGWRGAEVENIQRFLEDYPNAQTIRLEQNYRSTGHILNSANALI
SNNKNRLGKDLWTDSGNGDPVEVYEAFNELDEARYVASQIKQWCKNDGELNECAILYRSN
SQSRVMEEALIQADIPYRIYGGMRFFERQEIKDALAYLRLISNRQDDAAFERVVNTPTRG
IGDRTLDILRQLTRTRQITLWQAVQVAIQEEQLSGRAANALLRFIELINALDNETTEMPL
FEQTEFVINRSGLLDMYQKEKGEKGEVRIENLGELVTATRQFTKPDEAEDMTDLTAFLTH
ASLEAGESQASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGIFPSGRSFEEDRLQEERRL
AYVGITRAKKKLTLSYAENRRLYGKEERHIPSRFISELPEQHIQVVRLRGTINRPANFVK
SSQHRTASTSPISQDTGWQMGQKVQHSKFGQGTIINVEGSGEQTRLQIAFVQNGIKWLIA
RVAKLERI
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcattattattagacgggctgaatgaaaagcaacgtgaagcagttgccgct
cctgtaggtaactatttagtacttgctggtgcaggcagtggtaaaacccgtgttttaacc
catcgtattgcgtggctgattggtgttgaaaatattccagaatccaatattcttgcagtg
acctttaccaataaggcggccacagaaatgcgtcatcgtattgagcatacgctttcatcc
tctaatcatcgtttatttggaatgtgggtcggtacatttcacagtattgcaaaccgttta
ttacgttctcattatcttgatgccaatcttccgcaagattttcagattatggattcagaa
gatcaacatcgcttaattaaacgtttactcaaattacatcatattgatgagaaaaacttt
cctccaaaacaagtgatgtggtatatcaatggcaaaaaagataaaggattacgtccatat
caaatcgatcatcaaaatgatagcaatgaaaaaaaactggtcgaaatttatcaaatttat
caagatgcctgtaaccgtgcaggtttattagattttgctgaattattaattcgagcgtat
gaattatttaaggacaagccactgattttaaaacgttatcaagaacgctttccacatatt
ttaattgatgagtttcaagatactaaccaaatccaatacctttggattcgtctattagca
ggacaatctggcaatgtcattgtggttggtgatgatgatcaatccatctatggctggcgt
ggtgctgaagttgaaaatattcaacgctttttagaggattatcctaatgcacaaactatt
cgtcttgagcagaattaccgttccacaggacatattttgaatagtgcgaatgccttgatt
tccaataataaaaaccgactaggaaaagatttatggacggatagtggtaatggtgatcct
gttgaagtttatgaagcctttaatgagttagatgaagcccgttatgttgcttcacaaata
aaacaatggtgtaaaaatgacggtgaattaaatgaatgtgccatcctttatcgcagtaat
agccaatctcgtgtgatggaagaagccttaattcaagcggatattccttatcgtatttat
ggtggaatgcgattttttgaacgccaagaaattaaagatgcactagcctatttacgttta
atctccaatcgacaagatgatgcggcttttgaacgtgtcgttaatacaccgacaagaggg
attggggatcgtaccctagatattttgcgacaactgactcgtactcgtcaaattacactg
tggcaggcagtacaagtcgccattcaagaagagcaactttcagggcgtgccgctaatgct
ctattacgttttatagaattaattaatgctttagacaatgaaactacggaaatgcctctt
tttgaacaaaccgaatttgtcatcaaccgctcaggtttattagatatgtatcaaaaagag
aaaggtgagaagggtgaggttcgtatagaaaacttaggggaattagtgacagcaacacgt
cagtttactaagcccgatgaagcagaagatatgacggatttaaccgcattccttactcac
gcttctttagaagcaggtgaatctcaagcctcacctcatcaagattacgttgagttaatg
acgttacactccgccaaagggcttgagtttcctcgtgtatttattgtaggagtagaagaa
ggtattttcccaagtggacgaagttttgaagaagatcgcttgcaagaagaacgccgtttg
gcttatgtgggcattactcgagccaagaaaaaactcactttaagctatgctgaaaatcgc
cgtttatacggtaaagaagaacgtcatatcccatcacgttttatttctgaattaccagaa
caacatattcaggttgttcgtttacgaggaacaattaatcgccctgctaattttgtaaaa
agttcacaacatcgaaccgcttccacctctccaatatcgcaagataccggttggcaaatg
ggtcaaaaagttcaacatagtaaatttggacaaggaaccattattaatgtagaaggttct
ggtgaacaaacacgcttacaaatcgcctttgtgcaaaatgggattaagtggttaattgca
agagtagcaaaactggaacgaatataa
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