Phocoenobacter skyensis: A6B44_09385
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Entry
A6B44_09385 CDS
T06668
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psky
Phocoenobacter skyensis
Pathway
psky03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psky00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6B44_09385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psky03019
]
A6B44_09385
03009 Ribosome biogenesis [BR:
psky03009
]
A6B44_09385
Enzymes [BR:
psky01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A6B44_09385
Messenger RNA biogenesis [BR:
psky03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6B44_09385
Ribosome biogenesis [BR:
psky03009
]
Prokaryotic type
rRNA processing factors
A6B44_09385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
QLB23405
LinkDB
All DBs
Position
complement(1969316..1972186)
Genome browser
AA seq
956 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGRITRVEPSLEAAFVDYGTE
RHGFLPLKEISREYFPEGYVFRGSPSIKDIIKEGQEIIIQVNKEERGNKGAALTTFISLA
GSYLVLIPNNPRAGGISRRIEGEERLELKEILENLDVPDNMGLIVRTAGVGKSPEELQWD
LQVLLHHWEAIRKAAKSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSKKIFEKAKNH
IRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDI
NSARATRGSDIEETALNTNLEAADEIARQMRLRDLGGLIVIDFIDMTPVRHQREVENRIR
EAVLQDRARIQFGRISRFGLLEMSRQRLSSSLSEASSHICSRCQGTGKVRDNESISLSIL
RLVEEEAIKDNSKQVHAVVPVEVASYLLNEKRKAVDSIEKRHNVNVMVVPNENMETPHFS
VYRLRENEISSTLSYDLAKFYQLRDEDGTVTNDVLTEKSLANNEPVITVESVLQDTNLNL
QPAPVSKEKKVSLISRIIKKIKGIFVEEEEVKPKKGKYQHNNRGRNQRDRRNRKEYTNSN
NGRKVTQNNAKSKKRNESKKNNVATSNVTEEVVSVVDKKQAKTPQPNSNQVAERRQRRDL
RKKIRVENAAKQDIPQKEVAQHQKEIADSVIEKEQSTTVIEKVEQVQVAQPLLSQQESQQ
QDQPSEQNKDTTIKQNEGKESSRRRLPRHLRVGNQRRRQSQQTSMRLSSAVMSPEFASGK
VWIKAEKVVVADSKPRFLSVDEMLEQQNNELLTPVTPIVVKDKSVSSSRPLGNVITQESD
RDLVKEKNEKQKKSHSSDQVTVAVNEVQEEVKGKQLQTESYQSSYQFDGNLGTVSRVAHT
TAEMTLATSPLESEECFEAVEWQDSRYYFYGKGFGGHSSATSHIYSAPRLANTSEE
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgcgactcaaaaagaagagttgcgtgttgctttagttgatgggcaacgt
ttatttgatttagatattgaaagtccaggacatgaacaaaagaaatccaatatctataaa
gggcgaattactcgtgtagaacctagtttagaagctgcttttgtcgattatggtacagag
agacacggctttctccctttaaaagaaatttcccgtgaatattttcctgaaggttatgtt
tttcgtggtagtccaagcattaaggatattatcaaagaaggacaggaaattattattcaa
gtaaataaagaagagcgaggtaataagggcgctgctttaactacttttatttctttggca
ggaagttatttagtattaataccaaacaatcctagagcgggggggatttctcgtcgaatc
gaaggagaagagcgtttagaactaaaagaaattttagaaaatttagatgttcctgataat
atgggtctaattgtaagaacggctggtgtaggaaaatcaccagaagagttacagtgggat
ctacaggttttattacatcattgggaagcaattagaaaagcggctaaatctcgtcctgct
cctttcttaattcatcaagaaagtgatgtaattgtacgtgctattcgtgattatttgcgt
cgagatattggcgaaattctaattgatagcaaaaagatttttgaaaaagctaaaaaccat
attcgtcttgttcgtcctgattttattaatcgagttcgtctatacgaaggggaagtgcct
ttatttagccattatcaaattgaatcacaaattgagtcagcgttccaaagagaagttcgt
ttgccgtcgggtggttcgattgttattgatgcaacagaggctttaactgcgattgatatt
aactctgccagagcaactcgtggtagtgatattgaagaaacagcattgaatactaacctt
gaagctgctgatgaaattgctcgtcaaatgcgtttacgagatttaggtggattgattgtt
atagactttattgatatgacaccagtacgtcatcagcgtgaagttgaaaatcgtattcga
gaagcggttcttcaagatcgtgctagaattcaatttggacgaatttctcgttttggttta
cttgaaatgtctcgtcaacgtttaagctcttcactaagtgaagcatcttcacatatctgc
tctcgttgtcagggtacaggtaaagtacgagataacgagtctatttcactttcgatctta
cgtttagtagaagaagaagcgataaaagataattctaaacaagtacacgcagttgttcct
gtagaggttgcgtcatacttgttgaatgaaaaacgtaaagcagtggacagcatcgaaaaa
cgtcataatgttaatgttatggtggtaccaaatgaaaatatggaaacacctcactttagc
gtttatcgtttacgagaaaatgaaatatcttcgaccttgagttatgatttagcaaaattt
tatcagttaagagatgaagatggtacagtgacaaatgatgtgttgactgaaaagtctctt
gcaaataatgaacctgttattactgttgagtctgtattgcaagatactaatttaaacttg
caaccagcaccagtatctaaagaaaagaaagtgtcattaattagtcgtattatcaaaaaa
attaaaggtatttttgttgaggaagaagaagttaagcctaaaaaaggaaaatatcaacat
aataatcgaggtcggaatcaacgagatcgccgtaatcgaaaagagtatacgaattctaat
aatggacgcaaagtaacgcagaataatgctaaatcaaaaaaacgtaatgaaagtaagaaa
aataatgttgctactagtaatgtaactgaagaggttgtatcggttgtagataaaaaacaa
gcgaaaacaccacagccaaatagtaatcaggttgcagagcgtagacagcgtagagattta
cgtaagaaaattcgtgttgaaaatgcagctaaacaagatattcctcaaaaggaagtagca
cagcatcagaaagagatagcggatagtgttattgagaaagagcaaagtactacagtgatt
gaaaaagtggagcaagttcaagttgctcagcctttgttatcacaacaagagtctcaacaa
caagatcagccatcagagcaaaataaagacactacgattaagcagaatgaagggaaagaa
tcttcacgtcgtcgtttgcctcgccatctacgagtaggtaatcagcgtcgtcgtcaatct
cagcaaacatcaatgagactaagctctgcggtaatgtctcctgagtttgcaagtggaaaa
gtgtggattaaagctgaaaaggtggttgtagcagacagtaaacctcgttttctgtccgtt
gatgaaatgctagaacagcaaaacaatgagcttctcactccagtaacgccaattgtagtt
aaagataagagcgtttcgtcttctcgacctttaggtaatgtcattactcaagaatcagac
agagatttggtgaaagagaaaaatgaaaaacagaagaaatcacactcatcggatcaagta
acggtagctgtgaatgaagtgcaagaagaagtaaaaggtaagcaattacagacagagtct
tatcaaagtagctatcaatttgacggcaatttaggtactgtctcacgagttgctcataca
acggcagaaatgacattagctacatctccattagagtcagaagagtgttttgaggctgtt
gaatggcaagattctcgctattatttctacggcaaaggatttggcggtcattcaagtgcg
actagtcatatatattctgctcctcgattagcaaatacgagcgaagaataa
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