Phocoenobacter skyensis: A6B44_10470
Help
Entry
A6B44_10470 CDS
T06668
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psky
Phocoenobacter skyensis
Pathway
psky03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psky00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6B44_10470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psky03021
]
A6B44_10470
03400 DNA repair and recombination proteins [BR:
psky03400
]
A6B44_10470
Enzymes [BR:
psky01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6B44_10470
Transcription machinery [BR:
psky03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6B44_10470
DNA repair and recombination proteins [BR:
psky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6B44_10470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QLB23594
LinkDB
All DBs
Position
2194446..2198708
Genome browser
AA seq
1420 aa
AA seq
DB search
MKDLVKFLKSQSQTNDDFDVIKIGLASPDKIHSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIDLACPVAHIWFLKS
LPSRIGIILDMPLRDIERVLYFESYVVVEPGMTDLEKAQLLTEEQFWEAEERWGDEFEAK
MGAEGIQDLLRELDLDHECEMLREELQETNSETKRKKITKRLKVLEAFQHSGNKPEWMVL
KVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYSKLEGRGIASTIKAAKKMVEREEPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRENINALGEGMYFLDPREAEKAYRT
GQAELHARVKVRITEYQKSESGNYVATTNLVDTTVGRAILWMIAPKGMPFALFNQTLGKK
AISKLINESYRHLGLKESVIFADQIMYTGFAYAARSGSSVGIDDMVIPEEKESIISAAEK
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINRKGEMEKQPSF
NSIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCDTHEGIVMTPLIEGGDVKEPLRERV
LGRVVAEDVVKPGTDEILIPRNTLLDEKWCDVIDVESVDVIKVRSVVTCDTDFGVCAKCY
GRDLARGHIINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAIESSVQVKTSGTLK
LANAKFVTNKNGKLVITSRTTELTVVDIFGRTKEKYKVPYGTILSKGDGAEVEAGDVIAN
WDPHALPIIAEASGFIQFSDMIDGVTVTRQTDELTGLSSIVVQDVGERTAAGKDLRPALK
LVDKKGNDVLISGTDVPANYFLAGKSIVSLTDGAEISVGDALARMPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIISFGKETKGKRRLVITPAEGDAHEEMIPKWRQLNVFE
GEMIQRGDVISDGPEMPHDILRLRGIHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGIITNAYDSEFLNGEQVEVARVKIVNRKREAEGKPLVEYQRELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFSYHQKRAEKRKQNDIKL
DLTSSIMTEEQPVALKAEQTSATDEAAQSLAALLNAGLDG
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtaaagtttttaaaatcacaatctcaaacaaatgatgattttgatgta
atcaaaattgggttagcctcaccagataagatccattcatggtcttttggtgaagtaaaa
aaacctgaaacaattaattatcgtaccttcaaacctgaacgtgatggtcttttctgtgca
cgtatttttggaccagtaaaagattatgaatgtctttgtggaaagtataagcgtttaaaa
caccgtggtgtaatttgcgaaaaatgtggtgttgaagttacccaaactaaagtacgtcgt
gatcgtatgggtcatattgatcttgcgtgtccagtggcgcatatttggtttttaaaatct
ctaccatctcgtattggtattattttagatatgccattacgtgatattgaacgtgtgctt
tattttgaatcttatgtggttgttgagccgggaatgacggatcttgaaaaagcacagtta
ttaactgaagaacaattctgggaagcagaagagcgttggggcgatgaatttgaagcaaaa
atgggtgcagaaggtatccaagatttacttcgtgaattagatttagatcacgaatgtgaa
atgttgcgtgaagaattacaagaaaccaattcagaaacaaagcgtaaaaaaattaccaaa
cgtttaaaagtattggaagcattccagcattcaggtaataaaccagaatggatggtgttg
aaagtattacctgtattaccaccagatttacgtccattagtaccacttgatggtggtcgt
tttgcgacatcagatttgaatgatttataccgtcgtgtaatcaaccgtaataaccgttta
aaacgtttattagatttagtggcaccagatatcatcgtacgtaatgaaaaacgtatgtta
caagaatctgtagacgcattattagataatggtcgtcgtggtcgtgcaattactggttca
aaccgtcgtccacttaaatcattagcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaagcgtgtagattactctggtcgttcggtaattactgtaggtcca
tacttacatttacaccaatgtggtttaccgaaaaaaatggcattggaattattccgtcca
tttatttactctaaattagaaggtcgtggcattgcttcaacaatcaaagcggcgaagaaa
atggttgagcgtgaagagccgattgtttgggatattttagcggaagttattcgtgagcac
ccaatcttattaaaccgtgctccaacacttcaccgtttgggtattcaagcctttgaacca
ttattgattgaaggtaaagcgatccagttacatccattggtttgtgcggcgttcaatgca
gacttcgatggagaccaaatggcggttcacgttccattaactcttgaagcacaattagaa
gcgcgtgcgttaatgatgtcaaccaacaacgtattatctccagcaaatggtgagccaatc
atcgtaccttctcaggacgttgtattaggtctttactatatgacgcgtgaaaatatcaat
gcgttaggtgaaggtatgtacttcttagacccacgtgaagcagaaaaggcctatcgtact
ggtcaagcagagttacacgcacgtgttaaagtacgtattacggaatatcaaaaatcagaa
agtggtaactatgttgcaacaactaatttagtcgacacaactgtgggtcgtgctatttta
tggatgattgcaccaaaaggtatgccatttgcactgtttaaccaaacattgggtaaaaaa
gcaatttcaaaattaattaacgaaagctatcgtcatttaggtttgaaagagagtgttatt
tttgctgaccaaattatgtacactgggtttgcttatgcggctcgaagtggttcatctgtt
ggtatagatgatatggttattccagaggaaaaagaatcgattatttcagcggcagaaaaa
gaagttgctgaaattcaagagcaattccaatcaggtttagtgactgctggagagcgttat
aacaaagttatcgatatttgggcagctgccaatgagcgtgttgcaaaagcgatgatggaa
aacctttccacagaggaagttatcaatcgtaaaggtgagatggaaaaacaaccatcattc
aatagtatctttatgatggcagactcaggggctcgtggttcagcggctcagattcgtcag
ttagcgggtatgcgtggtttgatggcggcaccagatggttcaatcatcgaaacaccaatt
accgcgaacttccgtgaaggtctaaacgtacttcagtactttatttcaacccacggtgca
cgtaaaggtcttgcggatacggcattaaaaacagcaaactcaggttacttaacacgtcgt
ttagttgatgttgcacaagatttagtgattatcgaagatgattgtgatacacatgaaggt
atcgttatgacacctctcattgaaggtggtgatgttaaagaaccattacgtgaacgtgta
ttaggtcgagttgtggcagaagatgtggttaaaccaggtacagatgaaatcttaattcct
cgcaacacactacttgatgaaaaatggtgtgatgtgattgatgttgaatctgttgacgtg
attaaagtacgttcagtagtaacttgtgatacagacttcggtgtgtgtgcgaaatgttat
ggacgtgatcttgctcgtggtcatatcatcaatcaaggggaagccgtaggtgttattgca
gcacaatctatcggtgaaccaggaacacagttaacgatgcgtacgttccatatcggtggt
gcggcatcaacagcagcaatagaatctagtgtacaagttaaaacaagtggtacccttaaa
cttgcaaatgcgaaatttgtaaccaataaaaatggtaaattagttattacttctcgtaca
acagaattaaccgttgttgatatttttggacgtactaaagaaaaatataaagtgccttac
ggtactattctttctaaaggtgatggtgcagaagttgaagctggcgatgtaattgcaaat
tgggatcctcacgcattaccaattattgcagaagcaagtggttttattcaatttagtgat
atgattgatggtgtgactgttactcgtcaaacggatgaattaacaggtttatcatcaatt
gttgtacaagatgttggtgaacgtacagccgctggtaaagatttacgtccagcattaaaa
ctggtggataaaaaaggtaatgatgtattaatttcaggtaccgatgtgccagctaactat
ttcttagcgggtaaatctattgttagtttgacagatggtgctgaaatttcagtaggtgat
gcgttagctcgtatgccacaagagtctgtaggtactaaggatattacaggggggcttcct
cgagttgccgatttatttgaagcacgtaaaccaaaagagcctgcaattttagcagaaatc
tcaggtatcatttcatttggtaaagaaactaaaggaaaacgtcgcttagtaattacacca
gcagaaggcgatgcacatgaagaaatgattccgaaatggcgtcagcttaacgtgtttgaa
ggtgagatgatccaacgaggtgatgtaatctctgatggtcctgaaatgcctcacgatatt
ttacgtttacgtggtattcacgcagtaacggattatatcgtcaatgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaacgataagcacatcgaggttattgttcgtcagatg
ttgcgtaaaggaattatcaccaatgcttatgactctgaattcctaaatggagagcaggtt
gaagtcgcacgagtgaaaattgtgaaccgtaaacgtgaagcggaagggaaaccattggtt
gaatatcaacgtgaattattgggtattaccaaagcatcacttgcaactgaatcctttatt
tctgcggcatcgttccaagaaacaactcgagtgcttacagaagccgctgttgcgggtaaa
cgtgatgaattacgtggtctgaaagaaaacgtaattgtaggtcgtttaattcctgctggt
acagggttctcttatcatcagaaacgagcagaaaaacgtaagcaaaatgacattaaattg
gatttaacatcatcaataatgactgaagagcaacctgttgcattaaaagcagagcaaact
tcagcgactgatgaagcagcacaaagtttagctgcattgttaaatgctggtttagacggt
taa
DBGET
integrated database retrieval system
