Pirellula staleyi: Psta_2436
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Entry
Psta_2436 CDS
T01147
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psl
Pirellula staleyi
Pathway
psl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psta_2436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psl03019
]
Psta_2436
03009 Ribosome biogenesis [BR:
psl03009
]
Psta_2436
Enzymes [BR:
psl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Psta_2436
Messenger RNA biogenesis [BR:
psl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psta_2436
Ribosome biogenesis [BR:
psl03009
]
Prokaryotic type
rRNA processing factors
Psta_2436
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ADB17105
UniProt:
D2R4N9
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All DBs
Position
3171565..3173196
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AA seq
543 aa
AA seq
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MKEVSRMKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSI
QAAFVDFGVGRNGFLHISDVEPQYFRQGGYDPAEQIGGGRLADIDTGEDDDAPRPQQRRE
RRPPRGGRPRVKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGR
VGVSRKIEDDELRRTLRDTLLELNPPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIV
RRLKKTAGPATIYEESDMIIRTIRDIFTAEIDAIYIDHPEAFERAKEFLQLVMPRNVNRL
HQYEGREPLFHKYKVEQEIVQIYQRKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDAD
ETAYQLNISAAKEIARQLRLRDLGGVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKI
LRTSPFGLIEMTRQRIRPSLKRSVYGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNV
SRVTVRVNSEVASYLNNKKRREIMKLEDDAQMVVQILSHEGAFPEHLQVECRDNEGRELN
LPA
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagtatcccgcatgaaaagcgaaatgctgatcaatgtctcgcagcccgaagag
tgccgcattgccattatcgaagatgggctgctcgaagagctctatatcgagcgtgccagt
caagacaactacgtgggcaatatctatcgcggccgaatcgtcaatctcgagccgagcatt
caagcagcgttcgtcgatttcggtgtcggtcgtaatggatttctgcacatcagcgacgtc
gagccacagtactttcgccaaggtggctacgatccagccgagcagatcggtggaggccgt
ttggccgatatcgacaccggcgaagacgatgatgcgccacgtccccagcagcgtcgcgag
cgacgcccaccacgcggcggacgtccacgtgtaaagccaccgattcaagagatttttcgt
cgtggcgacgaagttctcgtgcaagtgatcaaggaagggattgggacaaaaggcccgact
ctttcgacctatatcagcattccaggtcgctacctcgtgctgatgccagcgctcggacgc
gttggtgtttcgcgcaagattgaagacgacgaactccgccgcacactgcgcgatacgctt
ctcgaacttaacccaccgaaggggcttggatttatcgttcgcacagcaggccaagatcgc
acgaagaaagagctttcgcgcgacatggcttacttgcttcgcctttggaaagtgattgtg
cgtcgcctgaagaagaccgctggcccagccacgatctacgaagagagcgacatgatcatt
cgtacgatccgcgacatcttcaccgccgagatcgacgcgatctatatcgatcatcccgaa
gcattcgaacgcgcaaaagagttcttgcaactcgtgatgcctcgtaacgtcaaccggctc
catcagtacgaaggtcgcgaacctctgttccacaagtacaaagtggagcaagagattgtg
cagatctatcagcgcaaggttccgctgcgtgggggcggttcgatcgtgatcgatcagacg
gaagctctggtggcgatcgacgtgaacagtggtaacttccgcgctgaagacgatgccgac
gagacggcttatcagctgaacatcagtgcggcgaaagagattgcccgccagcttcgtctg
cgcgatctcggtggtgtgatcgtaaacgacttcatcgacatgcgtaaagagcgtcatcgt
cgtggtgtcgagcgtgccttgcgggatgcgatgcgccgcgatcgggctcgcaccaagatt
ttgcgcacaagcccgtttggtctgatcgagatgacccgtcagcgcattcggcctagccta
aaacgcagtgtttatggcgattgcccatgctgcagtggtcgtggtgttgtgaagacagcc
gagagcatggcaatcgaagtagtgcgcatgctgatgctcgccagccagcagccgaacgtc
agccgcgtgacggttcgggtgaattccgaagttgcttcgtacctgaacaataagaagcgt
cgcgagatcatgaagctggaagacgatgcccaaatggtcgtccagattctcagccacgaa
ggtgctttccccgagcatttgcaggtcgaatgccgcgacaacgaaggtcgcgagctcaat
ttgcccgcgtaa
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