Pirellula staleyi: Psta_2523
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Entry
Psta_2523 CDS
T01147
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
psl
Pirellula staleyi
Pathway
psl02020
Two-component system
psl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Psta_2523
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Psta_2523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psl03021
]
Psta_2523
Transcription machinery [BR:
psl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Psta_2523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HD_5
LacI
HTH_23
MarR
HTH_Crp_2
HTH_21
DUF4604
Motif
Other DBs
NCBI-ProteinID:
ADB17192
UniProt:
D2R5L0
LinkDB
All DBs
Position
complement(3273831..3275315)
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AA seq
494 aa
AA seq
DB search
MRLSFGLEARQVQVQKLAPRMIQSMEILQLPLQELQERIEQELAENPLLEMLDRDPSLPD
EQVERELPNEKDVDDKPIVVDEAHNNADDFERLLNLDREVPDYFDESRRSSNRMEEDSDR
AHDVISNVADRPESLQDHLLHQLGEMDLSLELMQMAERIISTLDPLDGGYFRSSLRDLLP
IDATKEQIALAERALALIQQLDPPGIGARDLRECLLLQLTPTMFMYEELKTLITSHLEDL
RDNRLPLIQKSTGYSIDRIQKAWSELRKLNPKPASGFSEAFVPNVTPDVAVVRGEDGQYL
VQVDESRTPTLHISKYYRERLASGTATPEEREYIKRKINAAQWLIESIEQRRSTLTKVSQ
AIVDHQTKFLDEGPEHIEPLKMQQIADKVGVHVTTVSRAVDDKFIQTPRGIFPLKRFFVG
GTQTAEGDDVAWDIIRIRLQEIVDKENKQAPLSDDDLVEELKKQGLNVARRTVTKYRQKM
GIPSSRQRRDWSKT
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctttcttttggtctcgaagctcgacaagtccaggtgcaaaaacttgcgccccgg
atgattcagtcgatggagattctgcagcttccgctgcaagagcttcaggaacgtatcgag
caggaactggccgaaaacccgctcctggaaatgctcgaccgcgacccttcgctccccgac
gagcaagtcgaacgcgagctgcccaacgagaaagatgtcgacgacaaaccgattgtcgtt
gacgaagcgcataacaacgccgacgacttcgaacgtctgctgaatctcgaccgcgaagtt
cccgactacttcgacgaatcacgccgctcgtcgaaccggatggaagaagattccgaccgg
gctcacgatgtgatctcgaacgtcgccgaccgccccgagtcgctgcaagatcatctgctg
catcaactgggagagatggatctgtcgctcgaattgatgcagatggccgaacgcatcatc
agcacactcgatccgctcgacggaggctatttccgcagcagcctgcgcgatctgctgccg
atcgatgccaccaaagaacagatcgctttggccgaacgagccctcgcgctcattcagcag
ctcgatccccccggcatcggtgcccgcgatctgcgcgagtgcttactgctgcagctgacg
ccgaccatgttcatgtacgaagagctgaaaacgctcatcaccagccacctcgaagacctg
cgcgataaccgacttccgctgattcaaaaatcgaccggctattcgatcgatcgaatacaa
aaagcgtggagcgagctgcgcaaactcaatcccaaaccggcctctggtttctccgaagcg
tttgtccccaacgtcactcccgatgtggcggtggtgcgcggcgaagatggtcagtacctg
gtgcaagtcgacgagtcgcgcactcccacgctgcacatcagcaagtactatcgcgaacga
ctcgccagcggcacagcgactccggaagagcgcgagtacatcaagcgcaagatcaacgcc
gcgcagtggctgattgagtcgattgaacagcgtcgcagcacactcacgaaagtgtcgcaa
gcgatcgtcgatcaccaaacgaaatttctcgacgaagggcccgagcatatcgagcccttg
aagatgcagcagatcgccgacaaagtgggagtgcacgtcaccacggtcagccgcgcggtc
gacgacaaattcattcaaacaccacgcggcatttttcccctcaagcggttcttcgtcggt
ggtacgcaaacggccgagggggacgatgtcgcctgggacatcattcgcattcgcttgcaa
gagatcgtcgacaaagagaataagcaagcgccgctgagcgacgacgacttggtggaagag
ctgaaaaagcaagggctgaatgtcgcccggcgaaccgtcaccaagtatcgccaaaagatg
ggaattcccagcagtcgccagcgccgcgactggagcaagacgtag
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