Pirellula staleyi: Psta_3981
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Entry
Psta_3981 CDS
T01147
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
psl
Pirellula staleyi
Pathway
psl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psta_3981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psl03019
]
Psta_3981
Messenger RNA biogenesis [BR:
psl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psta_3981
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
dUTPase
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ADB18635
UniProt:
D2R224
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All DBs
Position
5172724..5174283
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AA seq
519 aa
AA seq
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MTGTQVLVTVIAVAVASGLTFAVLRFLDRLRKVDAENAAKEIVNRAERDAASKVKEAELA
IKEKELAQKAESERLLSKSREEIRDRERTLDKRQETLHQQSEDLRKQERIVEATQRRLAE
KLDEAGKRNEELGKMVDQQKQALYSISGLSEAEATRRLLGELEKQLEQEMGSLIIRQEKR
MAEVVDQKSRDILLTAMQRYAAAHTAESTTSTVDIPSDEMKGRIIGREGRNIRTFEKATG
VDVIIDDTPGVVIVSGFDPVRREIARQTLNKLIADGRIHPSRIEEIAAETTKEIEGFIQK
KGEEAAQEVNIHGIHPKVLYMLGRLHFRTSYSQNVLRHSVEVAFLSGLLAEMVGLDGDVA
RRAGLLHDIGKAADHELEGGHPKIGADLLKRHGEKIEIVHAALGHHDEIITEYPYTMLVA
TADACSASRPGARRESLERYIKRMEELESIAVGFPGVEQAFAIQAGRELRVIASSRDTDD
AKAAKICRDIAKAFEEQLTYPGEIKVTVVRESRFTEVAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
gtgacaggaactcaggtacttgtgaccgtgattgcagtggccgtggcgtcgggattgacg
tttgcggtcctccgattcttggatcgcctgcggaaggtcgacgccgaaaatgccgccaag
gaaatcgtgaaccgcgccgagcgcgatgctgcttccaaagtgaaggaagcggaactcgcc
atcaaagaaaaagagctcgcgcagaaggcagaatccgagcgattgctctcgaaatcgcgg
gaagagatccgcgaccgcgaacgaacgctggataagcggcaagagacgctgcatcagcag
tcggaagatctccgcaagcaagagcggattgtggaagcgacccagcgccgactggccgag
aaactcgacgaagccggtaagcggaacgaagaactcggcaagatggtcgatcagcagaaa
caggctctctattcgatcagcggcctttcggaagccgaagcgacgcgccgattgctcggc
gaactcgaaaaacaactcgaacaagagatgggctcgctcatcatccgccaagagaagcgg
atggcagaagtggtcgatcagaagtcgcgcgatattctgctcacagcaatgcagcgttat
gccgccgctcacaccgccgaaagcaccaccagtaccgttgatattccaagcgacgagatg
aagggtcggatcatcggccgcgaagggcgcaacattcgtacgttcgaaaaggcgaccggt
gtcgacgtgatcatcgacgatacgccgggcgtggtgattgtcagcggctttgatccagtg
cgccgcgaaatcgctcgtcaaacgctcaacaagctgatcgccgacggacggatccacccc
tcacgcatcgaggaaatcgccgccgaaacgaccaaagagatcgaaggcttcatccagaaa
aagggagaagaagcggctcaggaagtgaacattcacggcattcatcccaaagtgctgtac
atgctcggccgcttgcatttccgcaccagctacagccaaaacgtgctccgccatagcgtg
gaagtggcgttcctgtcgggtctgcttgctgaaatggtggggctcgatggggatgttgca
cggcgcgcgggtctcttgcacgatatcggtaaggcggccgatcacgagctcgagggtggt
cacccgaaaattggtgccgacctgctgaagcgtcacggcgaaaaaatcgagatcgtccat
gccgccttggggcatcacgacgaaatcatcaccgagtatccctacaccatgcttgtggcc
actgccgacgcctgcagcgcgtcgcgccctggtgctcgtcgcgagtcgctcgagcgttat
atcaagcggatggaagaactcgagtcgattgccgtcggctttcctggtgtcgaacaagcg
tttgcgattcaagccggtcgcgaactgcgcgtgatcgccagcagccgcgataccgacgat
gccaaggcagccaagatttgccgcgacattgccaaagcctttgaagagcaactgacctat
cccggtgaaatcaaagtgactgttgtccgcgaatcgcggttcacggaggtagcgaagtag
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