Pirellula staleyi: Psta_4007
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Entry
Psta_4007 CDS
T01147
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psl
Pirellula staleyi
Pathway
psl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psta_4007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psl03019
]
Psta_4007
03016 Transfer RNA biogenesis [BR:
psl03016
]
Psta_4007
Enzymes [BR:
psl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Psta_4007
Messenger RNA biogenesis [BR:
psl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Psta_4007
Transfer RNA biogenesis [BR:
psl03016
]
Prokaryotic type
tRNA degradation factors
Psta_4007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
KH_PNO1_2nd
HHO5_N
ClpS
Motif
Other DBs
NCBI-ProteinID:
ADB18661
UniProt:
D2R250
LinkDB
All DBs
Position
5208815..5211049
Genome browser
AA seq
744 aa
AA seq
DB search
MKVRVEKQIGNHTFSFETGYLAKQAAAAVLCQYGDTVVMNAAASGPGRPGIDFFPLTCDY
RERTAAAGKFPGGFIKREGRPTTKETLTSRLVDRPIRPLFPKGFRDEVQIQSIVLSSDKQ
NDGDVLAMNGAGCALFISALPFNGPIASVRVGRINGQFVAFPTHDDLETSDLDLIVSGSE
REVAMIEGFARELPENDMFEAILFAHNVIRDICALQREFAAKIGVNKEPFPAPAPDELFE
RLKSRFFEELKTARQTVGKHARAEAVKAVKNAAIAEFIPDPTAPDAIKPEVLKTVFHDLE
ELAVRSLILSGIRSDGRDNRTLRNIECEVDVLPRVHGSAVFQRGETQALITITLGTAKDE
QRVDGLFDEYAKKFMLDYNFPSFSVGEVRPIRGPGRREIGHGALAERSVNPVLPAPEEFP
YTIRVISDIMESNGSSSMASVCGATLGLMAAGVPISNPVAGISVGLVRESEQNWVLLTDI
IGDEDHFGDMDFKIAGTQNGITGIQLDLKVEGISTDIIRATFEQSREARIQILRKMLTVI
PRPKDEISPWAPRLIRTQIDPEKIGMLIGPGGKMIRGIQEATGCVIEVDDSGVVTIASSN
REWAEAALAQVEAVTATVQIGKIYNGRITSIKDFGAFVEIIPGRDGLVHISELSGGFVSS
VAEVCRVGDEMKVLVIDVDEHDRVKLSRRKAHEELGLPDELVPHGQPIPEGGDRGGDRGG
RGGGGRGGDRGGRGGGGGGRGGRR
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggttcgcgtcgaaaagcaaatcggcaatcacacgttttcgtttgaaactggttat
ctcgcgaagcaagctgctgcggcagtgctttgccaatatggcgataccgtcgtgatgaac
gcggctgcctcgggccctggccgccccggtatcgacttcttcccgctcacttgcgactat
cgcgagcgaactgctgctgcgggtaaattccccggcggttttatcaagcgtgaaggtcgc
cccactaccaaagaaaccctcacttcgcgattggtcgaccgaccgattcgcccgctgttc
cccaagggattccgcgacgaagtgcaaatccagagcatcgtgctctcgagcgacaagcaa
aacgatggtgacgtgctcgccatgaacggagccggttgtgctctgttcatttcggccctc
ccattcaatggcccgatcgcgtcggttcgggtcggccgcatcaatggtcagttcgttgcg
ttccctacgcacgatgatcttgaaaccagcgatctcgacctgatcgtctcgggcagcgaa
cgcgaagtcgccatgatcgaaggcttcgcccgcgaactccccgaaaacgacatgttcgaa
gcgatcctgttcgctcacaacgtgatccgcgacatctgcgctttgcagcgtgaattcgcg
gccaaaatcggggtcaataaagagcccttcccagccccagctcctgatgaactctttgaa
cgcctcaagagtcgcttcttcgaagagctcaagacggctcgtcaaaccgtgggcaagcat
gctcgcgctgaagctgtgaaggccgtgaagaacgcagctatcgctgagttcattcccgac
ccaaccgctcccgacgccatcaagcctgaagtgctgaaaaccgtcttccacgacctggaa
gaactggctgtgcgcagcttgatcctcagcggcattcgctcggatggccgcgacaatcgc
accctccgcaacatcgaatgcgaagtcgacgttctcccacgcgtgcacggctcggctgtg
tttcaacgtggcgaaacccaggccctcatcaccattacgctcggcaccgccaaggacgag
cagcgggtggatggcctgttcgacgagtatgccaagaagttcatgctcgactacaacttc
ccctcgttcagcgtcggtgaagtgcgtccgattcgtggtcctggtcgccgcgaaattggt
cacggagctttggccgaacgtagcgtgaatccagtgcttcccgcaccggaagaattcccc
tacacgattcgcgtcatcagcgacatcatggaaagcaacggcagctcgtcgatggcgagt
gtttgcggtgcgactctcggtctgatggctgccggtgttccgatcagcaatccagtcgcc
ggtatctcggttggcctggtgcgcgagagcgaacagaactgggtgctgctcaccgacatc
attggcgacgaagatcacttcggcgacatggatttcaaaatcgccggaacgcaaaacggc
atcaccggcatccagctcgatctgaaggtcgaagggatcagcaccgacatcattcgtgct
actttcgaacaatcgcgcgaagctcgcatccaaatcttgcgtaagatgctcaccgtgatt
cctcgtccgaaagacgaaatctcgccatgggcaccacgcctcatccgtacgcaaatcgat
cccgaaaagatcggcatgctcatcggtcctggcggcaagatgattcgtggcattcaagag
gctacgggctgcgtgatcgaagtcgacgacagcggcgtggtgacgattgccagctcgaac
cgcgaatgggctgaagcagctctcgcgcaggtcgaagctgtcaccgccacggtgcagatc
ggcaagatctacaacggtcgcatcaccagcatcaaggacttcggcgcgtttgtcgaaatc
atccctggtcgcgatggcctcgtgcacatcagcgaactctcgggtggctttgtcagctcg
gtggctgaagtttgccgcgtgggtgacgagatgaaagtgctcgtcatcgatgtcgatgaa
cacgaccgcgtgaagctcagccgacgcaaggcgcatgaagaactcggtttgcccgacgaa
ctagttccacacggtcagcccatcccagaaggtggcgatcgtggcggcgaccgtggtggt
cgcggcggcggaggccgtggtggcgatcgcggaggccgcggtggtggtggcggcggtcgt
ggtggacgtcgctag
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