Pirellula staleyi: Psta_4250
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Entry
Psta_4250 CDS
T01147
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
psl
Pirellula staleyi
Pathway
psl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psta_4250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psl03400
]
Psta_4250
DNA repair and recombination proteins [BR:
psl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psta_4250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psta_4250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SWI2_SNF2
AAA_22
T2SSE
AAA_16
Kinesin
Microtub_bd
AAA_7
AAA_25
UB2H
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADB18898
UniProt:
D2R449
LinkDB
All DBs
Position
5546849..5548924
Genome browser
AA seq
691 aa
AA seq
DB search
MPFQLESQFQPAGDQPQAIEKLVQGIRANKRSQVLLGVTGSGKTFTMANVIQQVQKPTLV
ISHNKTLAAQLYSEFKEFFPRNAVHYFVSYYDYYQPEAYIPQRDIYIEKDASINQEIDRL
RLASTSSLVSRQDVIIIASVSCIYGLGSPKDYKAMMVPLRVGQAIDRDEVLSRLVDIQYD
RNDIAFERGKFRVRGDCVEIWPSYEEYAFRIELWGDDIEKLSFINPISGETLATQDQLFI
YPAKHFVLPEERIAGAIETIKQELDERLNELREHGKLLEAQRLSARTRFDIEMLQEVGHC
PGIENYSRPLAGRPPGSTPDTLYDFFPEDYLLIIDESHVTIPQVRAMYNGDRARKITLVE
HGFRLPSALDNRPMKFEEWEQKIKQVVYVSATPNDYELLQSQGEVVEQIIRPTGLLDPVI
EVVSARGQVQHLLEQIRERAAVGERVLVTALTKRLAEDLSAYLVQQKVACKWLHSELDAF
ERVELLRDLRQGKFEALIGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA
RNVNAKVILYADKITESMRLAMEETSRRRAIQEAYNLEHGITPETVKKHIRAGIESAMAA
HRDANAAVGRVDEEEVITEELLSELEAEMLEAAEKLEFERAGALRDRITQLRDAKGKRVS
EVKLEAYRPGANRKKGKRSQGGAKVPRPKRG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgccattccaactcgaaagtcagtttcagcctgccggagatcagccgcaagcgatcgaa
aaactggtgcagggaatccgcgccaataaacggagccaggtgctgctcggcgtcaccggt
tcgggcaaaacgttcaccatggcgaacgtgattcagcaggtgcagaagccgacgctggtg
atctcgcacaacaagacgctggcagcgcagctgtactccgaattcaaagagtttttccca
cgcaacgcggtgcactatttcgtcagctactacgactactatcagccggaagcctacatt
ccgcagcgcgatatctatatcgaaaaagatgcgtcgatcaaccaagagatcgaccgcttg
cgattggcctcgaccagttcgctggtaagccggcaagatgtgatcatcatcgccagcgtg
tcgtgcatctacggtttaggatcgcccaaagattacaaggcgatgatggtgccgctgcgt
gtgggccaagcgatcgaccgcgatgaagtgctgagccgactcgttgatattcagtacgac
cgaaacgacattgcgtttgaacgtggcaagtttcgtgtgcgtggcgattgtgtcgagatc
tggccttcgtacgaagagtatgcgtttcgcatcgagctgtggggagacgatatcgagaag
ctgtcgttcatcaaccccatcagcggcgagacattggcgacgcaagatcagctgttcatc
tacccggccaagcactttgtcttgccagaagagcggattgcgggagctatcgagacgatt
aagcaggaactcgacgagcggctgaacgaactgcgcgagcatggcaaactgctcgaagcg
cagcggctgagtgcgcgcacgcggtttgatatcgagatgctgcaggaagtgggacattgc
ccagggattgagaactacagccgaccgctagcggggcgtcccccgggaagcacccccgac
acgctgtacgacttttttcccgaagactatctgctgatcatcgacgaatcgcacgtcacg
attccgcaagtgcgagcgatgtacaacggcgatcgtgcacgcaagatcacactcgttgag
cacggctttcgcttgcccagtgcgctcgacaatcggccgatgaaattcgaggagtgggag
cagaaaatcaagcaagtggtgtatgtctcggcgacaccaaacgactacgaactgctgcag
tcgcaaggcgaagtggtggagcaaatcattcggccgacagggctgctcgatccggtgatc
gaagtggtttctgcgcggggtcaggtgcagcacttgctcgagcaaattcgcgagcgggca
gcggtcggagaacgtgtgctggtgaccgcgctcacgaaacgtttggcagaagatttgtcg
gcctatttggtgcagcagaaggtggcgtgcaagtggctgcatagcgagctcgatgcgttt
gaacgggtggagctgctgcgcgatttgcgacaagggaagttcgaagcgctgattggagtg
aacctgctccgcgaagggttggacttgcccgaagtttcgctcgtggcgattttggatgcc
gataaagaaggcttcttgcggagcgaaacatcgctgattcaaacgattggtcgcgcggca
cgtaacgtgaatgccaaggtgattctgtatgccgacaagatcaccgaatcgatgcggctg
gcgatggaagagacctcgcgccggcgcgcgattcaagaggcttacaacctcgagcatggg
attacgcccgagacggtgaaaaagcatattcgcgcaggaatcgaaagtgcgatggccgcg
catcgcgacgcaaacgccgctgtcggacgggtcgacgaagaggaagtgatcaccgaagag
ctcctgagcgaactcgaagcggaaatgcttgaagctgccgagaaactcgagttcgaacgg
gccggtgcgctgcgcgatcggattacacagctgcgcgacgccaaaggaaaacgagtgagc
gaggtgaaactcgaagcctatcgtcctggggcgaatcgcaagaaggggaagcggagccaa
ggtggcgcgaaggtgccacgacccaagcgaggctag
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