Pirellula staleyi: Psta_4682
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Entry
Psta_4682 CDS
T01147
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psl
Pirellula staleyi
Pathway
psl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psta_4682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psl03019
]
Psta_4682
03016 Transfer RNA biogenesis [BR:
psl03016
]
Psta_4682
Enzymes [BR:
psl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Psta_4682
Messenger RNA biogenesis [BR:
psl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psta_4682
Transfer RNA biogenesis [BR:
psl03016
]
Prokaryotic type
tRNA degradation factors
Psta_4682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
DUF1918
Motif
Other DBs
NCBI-ProteinID:
ADB19324
UniProt:
D2R7Z3
LinkDB
All DBs
Position
complement(6092137..6095004)
Genome browser
AA seq
955 aa
AA seq
DB search
MNLPEFEEQSDRPLPESSSISDSSPLSELPESPADFPLEKDSPAARKLEPLVLAHVLAKN
YQPVKPKVIAKQMKLRSDQLPALKLAIRRLVKAGKLAYGSSHMVRKPDLLPPLPPESAKA
REGTKKSKPARDLAVESTDDDLPDDVVNDLADETLDEAEAFAAEEAAADSSAEVDPDDFL
AMRAAKLKEKPSRRGKDKTVTGKFKRAAAGFGFVRPLDVTSRGDRTQDIFIPQNASQDAA
NGDIVRVRLVSGGRSLRKSGEIVEILERDTHQFVGVYQEQRGSGVVEVDGRVFAVPISVG
DPGAKGAAPGDKVVIEMVRFPSHTHEGEAVITEVLGARGTPGIDTLSIMREYELPEAFPE
AVLAASREEAEKFDESIGDRRDFTKTTIITIDPVDARDFDDAISLTKLESGNYQLGVHIA
DVSHFVKPKSVLDREARDRATSVYLPDRVLPMLPEIISNNLASLQPDKVRYAQTAIIEFS
PEGTPLHSEFYLSAIKSCRRFTYEEVDDYLADRQAWKKKLKPQVHELLGVMHELAMILRR
RRLERGAIELSLPETKIDLDKKGEVSGAHLSKNTESHQIIEEFMLAANEAVARHLNEKEL
PFLRRIHENPDLRKLQVLTKFVRELGIECDSLESRFEIKRVIKEVAGAPEEHAVNYAVLR
AMQKAIYSPAVEGHYALHSEHYCHFTSPIRRYPDLTIHRMLRSLIHGKKPAADFASQVLL
AEHCSEREQRAQAAERDLIKVKLLGYLSKRVGSEMDAVITGVEEFGIFVMGIDLPAEGLI
HIQSLEDDYYKFDSDTHSLTGRRAGNRFRLGDVLRVSVAKVDVDRRELDFRFVGRLKSDR
THLSRLPRSGVRMRQDVPDEMQNDADFPPRRDEGSRPEFPDRGPPREGGARGGYQGGGSR
GKSFGSRSGGGRSSGGGDRSGGSFGSGGKKKKFPGSKPSFGGGGGKGKKGRKKGR
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgcctgaatttgaagaacaatctgatcgtcccctccccgaatcctcctctatt
tctgatagctcgccattatccgagcttcccgagtcgccagcggattttccgctcgagaaa
gactcgcccgcagcacgcaagctcgagcccctggtgctcgctcatgtgctcgccaaaaac
tatcagccggtaaagcccaaggtcattgcgaagcagatgaagctccgcagcgatcaactt
ccggctctcaagctggccattcgtcggctggtgaaggcaggcaaactggcctatggctcg
tcgcacatggtccgcaagccggatctcctgccaccgcttccgcccgagagtgcgaaggct
cgcgagggtacgaaaaaatcgaaaccggctcgcgatcttgcggtcgagagtaccgacgat
gatctgcccgacgatgtggtgaatgatctcgccgatgaaacgctcgacgaagcggaagca
tttgccgctgaggaagctgccgctgacagcagcgccgaggtcgatccggatgactttctc
gccatgcgtgctgcgaagctgaaagagaagccatcgcgccgcggcaaggacaaaacggtc
actggcaagttcaagcgagctgctgctggtttcggttttgtccgtcccctcgacgtcacc
agccgaggcgaccggacccaggatattttcatcccccaaaacgcttcgcaagatgcggcc
aatggcgatattgtgcgcgtgcggctggtctcgggtggtcgcagtttgcggaagtcgggc
gagatcgtggagattctcgagcgcgatacccaccagtttgtcggcgtctatcaagagcag
cgcggcagcggtgtggtggaagtcgacgggcgcgtgtttgccgtgccaatttcggtcggc
gatcctggtgcgaaaggtgccgcgccgggcgacaaggtcgtgatcgaaatggtccggttc
ccttcgcacacgcatgaaggggaagcggtgattaccgaggtgctgggagcacgtggcact
cccggaatcgacacgctgtcgatcatgcgcgagtacgaattgcccgaagcatttcccgaa
gcggtgctcgctgcctcgcgtgaagaagcggaaaaattcgatgagtcgattggcgatcgc
cgcgactttacgaaaaccaccatcattacgatcgatcctgtcgatgcccgcgatttcgac
gatgcgatttcacttaccaagctggaaagtggcaactatcagctgggtgttcatatcgct
gacgtttcgcacttcgtgaaaccgaagtcggtgctcgatcgtgaggcacgcgaccgcgct
acgagcgtctatttgcccgaccgtgtgctcccgatgttgcccgaaatcatcagcaacaac
ttggcgagcttacagcctgacaaagtccgttatgcacaaacggcgatcatcgagttttcg
cccgaagggacgccgctccatagcgagttctacttgtcggccatcaagagctgtcgccgc
ttcacctacgaggaagtggatgactacctggctgatcgacaggcttggaaaaagaagttg
aagccacaggttcacgagctgctgggcgtgatgcacgagctggcgatgattttgcgtcgt
cggcgtttggagcggggggccattgagctttcgcttcctgaaacgaagatcgacctcgat
aagaagggggaagtctccggtgctcatctctcgaagaacaccgagagtcatcagatcatc
gaagagtttatgctcgccgctaacgaagcggtggctcgtcacctgaacgaaaaagagttg
ccgtttttaaggcgtattcacgaaaatcccgacctgcgtaagctgcaagtgctgaccaag
tttgtgcgcgaacttgggatcgaatgcgatagtctcgaaagccgattcgagatcaagcgt
gtgattaaggaagtggctggcgcgccggaagagcatgcggtgaactacgccgtgttgcgt
gcgatgcaaaaggcgatttacagcccggctgtggaggggcactatgcgttgcatagcgag
cactattgccacttcacttcgccgattcggcgctatcccgacctaacgatccaccggatg
ctgcggtcgctgattcatggcaaaaagcctgccgccgactttgcgtcgcaagtgctgttg
gccgagcattgcagcgagcgcgagcagcgtgctcaagcagcggagcgggatctgatcaag
gtcaaactgctcggctatttatcaaaacgtgtcggcagcgaaatggacgccgtgatcacc
ggtgtcgaggagtttgggatttttgtgatggggatcgatcttccagcggaaggtttgatt
cacatacagtcgctcgaagatgactactacaagttcgatagcgacacgcattcgctgaca
ggtcgtcgcgcgggaaatcgcttccgcctgggggacgtactccgcgtgtcggttgccaag
gtcgatgtcgatcgacgcgaactcgatttccgattcgtcggacgattgaagtcggatcgg
acccatctgagtcgcttgccgagaagtggcgtgcggatgcggcaggatgttcctgacgaa
atgcaaaacgatgccgattttcctcctcggcgcgacgagggaagtcgtcccgagtttcct
gatcgtggcccgcctcgcgaaggtggggctcgtggcggctatcagggtggcggatcgcgt
ggcaagtcctttggcagtcgcagcggtggggggcgaagtagtggtggcggagatcgctcg
gggggatcgtttggctctggcggtaagaagaaaaagtttcccggcagcaagcccagcttt
ggtggtgggggtggtaaggggaaaaagggacgcaaaaaagggcgatag
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