Pseudoalteromonas sp. LC2018020214: JG479_01250
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Entry
JG479_01250 CDS
T10970
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Pathway
pslc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JG479_01250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pslc03021
]
JG479_01250 (rpoC)
03400 DNA repair and recombination proteins [BR:
pslc03400
]
JG479_01250 (rpoC)
Enzymes [BR:
pslc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JG479_01250 (rpoC)
Transcription machinery [BR:
pslc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JG479_01250 (rpoC)
DNA repair and recombination proteins [BR:
pslc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JG479_01250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QQM64529
LinkDB
All DBs
Position
1:269762..273937
Genome browser
AA seq
1391 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDSLEEHGDEFEAKM
GAEAVLDLLRELDLAQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGAIFKDPKEAEKAYRSG
NADLHAIVKVRISQSVKNEDGIVEDTVTVIDTTVGRAILSLILPKGMPFASINQPLGKKQ
ISGLLNECYRRLGLKDTVIFADQVMYTGFHYAMKSGVSIGIDDLVIPPIKAQIIESAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAKGEEVEQPSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEDIVIPGTNTVLVERNVMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCANCYG
RDLARGHIINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKTNGTLKL
HNSKYVLNTDGKIVITSRSTEITIIDSHGREKERYKVPYGAVLTVQDNAEVQGNDIVATW
DPHSHPIVLEHKSKVSFSDIDDSNTEAQTDELTGLTRVVVKDLAKVNTKEPKLIIESEER
GLQETRLPSFTTIEVIDGVTANPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEVTGTISFGKETKGKKRLVITPAEGDHYEEMIPKWRQLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTDFL
AGEQIEVARVNIANRDLEKQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQERMARRKQSKVVVEEQTVSAEEATQALT
DALNADLSGNQ
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcaccagacatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagactattaactaccgtactttcaagcctgagcgcgacggcttattctgtgcccgt
attttcggcccagtgaaagattatgagtgtttatgtggtaaatataaacgccttaaacac
cgtggtgtgatctgtgaaaagtgtggcgttgaagtaacactcactaaagtgcgacgcgat
cgtatgggtcatatcgaccttgcgagcccagttgcacatatatggtttttaaaatcatta
ccgtcacgtattggcttaatgctagatatgacgcttcgtgatattgaacgtgttctttac
ttcgaatcattcgtagtaactgagcctggtatgacaacgcttgagcgtggtcaactatta
ggtgaagaagaatacttagattcactagaagagcacggtgatgaatttgaagcgaagatg
ggtgctgaagcagttttagacttgcttcgtgaacttgatcttgctcaattaattgctgag
atgcgtgaagagttaccaacaattaactctgaaactaagcgtaaaaaaatcactaaacgt
cttaagttaatggaatcgttccaccaatcaggtaataaccctgagtggatgatcatgaca
gtacttccagtattgccacctgatctacgcccattagtaccattagacggtggtcgtttt
gcgacatctgatctaaacgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctactagatttagcagcaccagacattattgtacgcaacgaaaaacgtatgttacaa
gaagcggtagatgcgctacttgataacggtcgtcgtggtcgtgcaattacaggttctaac
aaacgtcctcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgtagattattcaggccgttctgtaatcacagtaggtcctaca
cttaagcttcaccaatgtggtcttcctaagaagatggcactagagctattcaaaccattc
atctatggcaagttagaacgtcgcggcatggctacgacaatcaaagcagctaagaagatg
gttgaacgtgaagttccggaagtatgggatgtacttgacgaagtaattcgtgaacatcca
gtattacttaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaacctgtg
cttatcgaaggtaaagcgattcatttgcacccattagtatgtgcggcctacaacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgttaacaatcgaagcacagcttgaagct
cgtgccttaatgatgtcaacaaacaacattctatctcctgcgaatggtgagccaatcatc
gttccttcacaggatgttgtattgggtctttattacatgactcgtgaccgcattaacgct
aaaggcgaaggcgcgatatttaaagatccaaaagaagcagaaaaagcataccgcagcggc
aatgcagaccttcacgcaatcgtgaaagtacgtattagccaatcagttaaaaacgaggac
ggcatagtagaagacactgttactgttatcgatacaactgttggtcgtgcaattctgtct
ctaattttacctaaaggcatgccgtttgcgtcaatcaaccagccgctaggtaaaaagcag
atttctggcttattgaatgagtgttaccgtcgtctaggtcttaaagatacagttatcttt
gctgaccaagttatgtacaccggtttccattatgcaatgaagtcaggtgtttctatcggt
attgatgacttagttatcccaccgattaaagcacagataattgaatcagctgaagctgaa
gtgactgaaatcaaccaacaattccaatcaggtcttgtaacggctggtgaaaagtacaat
aaagttatcgatatctggtcacgtgtaaacgaaaacttatcacgtgagatgatggctaac
ttgtcaaaagatacagttatcaatgcaaaaggtgaagaagtagagcaaccgtcatttaac
tcagtgtttatgatggccgactcaggtgctcgtggtagtgctgcacagattcgtcagttg
gcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacgccaatcaca
gctaacttccgtgaaggtctaaacgtacttcagtacttcatctcaacgcatggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagcaaactcgggttacctaacgcgtcgtcta
gtagacgttgcacaagatttggtaatcaatgaagatgactgtggcacagaagatggctta
acaatgaaaccgcttattgaaggtggtgatgttgtagaagcacttcgcgaacgtgttcta
ggtcgtgttgttgctgaagatattgtaattccaggtactaatactgtacttgttgaacgc
aatgttatgcttgacgaaaaactgtgtgaccttttagaagagcactcagttgatgaagtt
cgcgtacgttctgttatcacatgtgataatgactttggtgtttgtgctaactgttacggt
cgtgacctagcacgtggtcacatcattaacgctggtgaatcagtgggtgttatcgcggct
caatcaatcggtgagccgggtacacagttaacaatgcgtaccttccacatcggtggtgcg
gcatctagagcatctgcagaaaataatgtacaagttaaaactaacggtacattaaaactt
cataactctaagtacgtattaaacacagacggtaagattgttattacctctcgttctacg
gaaattactatcatcgatagtcatggtcgtgagaaagagcgttataaagtaccttacggt
gcggtactaacagtgcaagacaatgcagaagttcaaggtaacgacatcgttgctacttgg
gacccgcatagtcacccaatcgttcttgagcataagtcaaaagtatcgttcagcgatatc
gatgattcaaatactgaagcacagactgatgaactaaccggtttaacccgtgtagttgta
aaagatcttgctaaagtaaatacgaaagaaccaaagcttatcattgaaagtgaagagcgc
ggtctgcaagaaacacgtcttccttcattcactacgattgaagttattgacggcgttaca
gcaaacccaggtgacgtgttagcacgtattccgcaagaaggttcgaaaactcgtgatatc
acgggtggtctaccacgcgtagccgacttatttgaagctcgtaagccaaaagatccagct
atattagctgaagtaactggtacaattagcttcggtaaagagactaaaggtaagaagcgt
ttagttattactccagctgaaggtgatcattacgaagagatgattcctaagtggcgtcaa
cttaacgtgtttgaaggtgagcaagtgtctaaaggtgaagttattgccgatggtcctgaa
tcaccgcatgacatcttacgcctacgtggtgtgactcatgttgctaactatatcgttaac
gaagtgcaagaggtttaccgtttgcaaggcgttaagatcaatgacaagcacattgaaaca
attatccgtcaaatgttacgtaaatgtaccattatgcacggcggtgatactgacttctta
gctggtgaacaaatcgaagtggcgcgcgttaatatcgcaaaccgtgaccttgaaaaacaa
ggtaagataccagctaagtttgaaatccagttaatgggtatcacaaaagcatcactagca
acagaatctttcatctctgcagcgtctttccaagagacaacacgtgttcttacagatgcg
gcagtgaatggtaagagcgatgagcttcgcggtcttaaagaaaacgtaattgtgggtcgt
ttgatcccagccggtaccggttttgcgtatcatcaagaacgtatggctcgccgtaaacaa
agcaaagtagtagtagaagagcaaacagtaagtgcagaagaggcgactcaagcacttaca
gacgctctaaatgctgatttgtctggaaatcaataa
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