Pseudoalteromonas sp. LC2018020214: JG479_03295
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Entry
JG479_03295 CDS
T10970
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Pathway
pslc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JG479_03295 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslc03019
]
JG479_03295 (rnr)
03016 Transfer RNA biogenesis [BR:
pslc03016
]
JG479_03295 (rnr)
Enzymes [BR:
pslc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JG479_03295 (rnr)
Messenger RNA biogenesis [BR:
pslc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JG479_03295 (rnr)
Transfer RNA biogenesis [BR:
pslc03016
]
Prokaryotic type
tRNA degradation factors
JG479_03295 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
VOZ_N
Motif
Other DBs
NCBI-ProteinID:
QQM64909
LinkDB
All DBs
Position
1:752929..755424
Genome browser
AA seq
831 aa
AA seq
DB search
MSNQDPNLSREQEKYENPVPSREFILTHLQERSKPANYAQLCEELAVNDDERQIAFKRRL
RAMERDGQLYFNKFKCYALIDEAGLTKGKVIGHRDGFGFLEVEGESKDWFIAKHQMNMVL
HGDIVLAKGTKRGSGSKCDARIIKVLTNERAPIVGRYFVEHGVAVVVAEDPRITQDIMIL
PGNENGARHNQMVQVKITQNPSRNMNAVGKVIDVLGEHLAPGMEIEVALRNHDIPHVWPE
EVEAQVAHLGEFVEEADKQGRVDLRDLPLVTIDGEDARDFDDAVYCEPKKSGGWRLWVAI
ADVSHYVGMNTPLNKEAILRGNSVYFPEQVIPMLPKVLSNGLCSLNPKVDRLCMVAEMTV
SSAGKLSGYKFYEAIMNSHARLTYTKVNAILQNDEKLREEYSAVVPHLTDLQQMYMALKA
ARQDRGAIEFETLETRFVFNAQRKIESIVPVIRNDAHKLIEECMILANVSAAKILEKHEA
SALYRVHDEPDQEKLGNFTKFLGELGIESTLSDEPTPKEITQVLARLGDRPEAELIQTML
LRSMKQAVYQPDNIGHFGLALSAYAHFTSPIRRYPDLVVHRAIKAVIKAQGQQTSGEYAY
TDDEVDQLGEQCSTTERRADDATREVADWLKCEFMQDHVGEEFDGVISSVTNFGLFIRLD
DLQIDGLIHVTNLGDEFFAHDAAKHTLIGEHSHKVYRLGDKVTVKVASVSLDDRRINLTL
KGDVAQDRYSRRRAPKKGSGKSEHAPASVRSQLKAGKVPGKKSHSDDKPKGKKKPANKDK
GKPANKSATKSADKKAADTAVKKKPKKKAVKKPKRAGKNARKRTSPGADNT
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccaagatccaaatctcagtcgagaacaagaaaagtacgaaaacccagtccct
agtcgtgagtttatacttactcaccttcaagagcgttcaaagcctgctaactacgcgcaa
ttatgtgaagaactagcagtaaacgatgacgaacgccaaatagcatttaaacgccgcctt
cgcgctatggagcgtgacggacagctgtatttcaataaatttaaatgctacgccctaatt
gacgaagccggtttaaccaaaggcaaagtaataggccacagagacggtttcggcttttta
gaagttgaaggcgagagtaaagattggtttattgctaagcaccaaatgaatatggtgtta
catggcgacattgtactagctaaaggcactaaacgtggttctggctcaaaatgcgatgca
cgtattataaaagtgcttactaacgagcgcgcgccaattgttggccgttactttgttgag
cacggtgttgctgttgtagtcgctgaagacccgcgcataacgcaagatataatgatttta
ccaggcaacgaaaacggtgcccgccataaccaaatggtgcaggttaaaattacgcaaaat
ccaagccgtaacatgaacgcggtaggtaaagttatagatgtacttggtgagcatttagcc
ccaggtatggaaattgaagttgcactgcgcaatcacgatattccacatgtatggccagaa
gaagttgaagcacaagttgctcacctaggtgaatttgttgaagaagctgacaaacaaggt
cgtgtagatttacgtgatttaccacttgtaactattgatggcgaagatgcacgcgacttt
gatgacgccgtatattgtgaacctaaaaaatcaggtggctggcgcttatgggttgctatt
gccgatgtatcgcattacgtaggaatgaacacgccgcttaacaaagaagcaattttgcgt
ggtaactcagtgtattttcctgagcaagttattccgatgctaccaaaagtgctttctaac
ggattatgttcgcttaatccaaaagtagatcgcttatgtatggttgccgaaatgaccgtg
tcgagcgcgggtaaactttcgggttataagttttacgaagcgataatgaactcgcacgca
cgtttaacttacaccaaagtaaatgccattttacaaaacgacgaaaaactacgcgaagaa
tactcagcggttgtgccacatttaactgacttacagcaaatgtacatggcacttaaagct
gcacgccaagaccgtggtgccatagagtttgaaaccctagaaacacgttttgtatttaac
gctcagcgtaaaatagaatcaatagtgcctgttattcgtaacgacgcgcacaaactcatt
gaagaatgtatgattttagccaacgtatcagcggctaaaattcttgaaaagcacgaagca
agcgcgctttatcgtgtgcatgacgaaccagatcaagaaaaactaggtaactttactaag
tttttaggcgagttaggtattgaaagcacattaagcgacgagccaacaccaaaagaaata
acgcaagtattagcgcgactaggtgaccgcccagaagctgaacttattcaaactatgtta
ctgcgttcaatgaaacaagctgtatatcagccagataacattggtcactttggtttagcg
ttatcggcttacgcgcattttacatcgccaatacgtcgttacccagatttagtagtacat
cgtgctattaaagcagtaataaaagcacaaggtcagcaaacgtctggcgaatacgcttat
accgacgatgaagttgatcaactaggtgagcagtgttctacaacagagcgccgcgccgat
gatgcaactcgcgaagtagctgattggcttaaatgtgagtttatgcaagaccatgtaggt
gaagagtttgatggtgttatttcatcggttaccaattttggtttgtttattcgtttagac
gatttacaaattgatgggcttattcacgttactaatttaggcgacgagttttttgcgcat
gatgctgcaaaacacaccctaataggtgagcactctcacaaagtttatcgccttggcgat
aaagtaacagttaaagttgcgtcggttagtttagacgatcgccgtataaatttaacgctt
aaaggcgatgttgcacaagacagatactcacgtcgtcgagcaccaaaaaaaggttcaggt
aagtctgagcatgcgccagcaagtgtgcgttcgcaattaaaagcaggcaaagtaccaggt
aaaaagtcgcacagcgatgacaaaccaaaaggtaaaaaaaagccagcaaataaagataaa
ggcaagcctgcaaataagtctgcaacaaaatctgcagataaaaaagcagcagacactgcc
gtaaagaaaaaaccgaagaagaaggccgttaaaaagcctaaaagagcaggcaaaaatgcc
cgcaaacgtactagcccaggagcagacaatacgtga
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