Pseudoalteromonas sp. LC2018020214: JG479_05310
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Entry
JG479_05310 CDS
T10970
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Pathway
pslc03030
DNA replication
pslc03430
Mismatch repair
pslc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JG479_05310 (dnaE)
03430 Mismatch repair
JG479_05310 (dnaE)
03440 Homologous recombination
JG479_05310 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pslc03032
]
JG479_05310 (dnaE)
03400 DNA repair and recombination proteins [BR:
pslc03400
]
JG479_05310 (dnaE)
Enzymes [BR:
pslc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JG479_05310 (dnaE)
DNA replication proteins [BR:
pslc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JG479_05310 (dnaE)
DNA repair and recombination proteins [BR:
pslc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JG479_05310 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QQM65293
LinkDB
All DBs
Position
1:1214293..1217784
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAPDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNFCGLVRFYGATHNA
GIKPIVGADFWVRSPEFPDEPSRLTILAKDNDGYKNITLLISKAYQRGHVFHRPVIDREW
LVELKAGLIILSGAKDGDLGKALLKNNPTVIESVVSFYKQHFSDNYYLELVRTNRPLEED
YLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRPKRFSEEQYL
KTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGLLKIEDFLVKVSQDGL
EERLQFLFPDEEDRKVKRVEYDERLAIELGVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPGDPGMTLAKAFDVEPR
LQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMKRQGKDPVDINTIPLDDKKSIELL
LRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKLGREE
ISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHHPA
EFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTVNLEGEIVYGIGAIKG
VGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYAGALDQLGPEKTQSGR
ATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQAFIKATGLTDNEWLDGEKE
TLGLYLTGHPINQYRRELRHYTSGKIVDLQPTNRDVFATAAGLVIASRVLINKKGNRWAL
VTLDDKSARIDVRLYSDEFEKYQDMLQVNNILVISGQVSFDNFSGGITMTAREINTIAQA
REKRIKAIKMTLNMVQIEAGFFDKLQKVLEPYKMGTCPIKVYYQRPDALAQLTLGIEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcctgattttgttcatttaagagttcattcagacttttcgatggttgatggc
cttgctaaaacaaagccaatagtcgcaaaagcgcaagagctgcaaatgccagccattgca
attactgatcaaatgaatttttgtggtttagtgcgtttttatggcgccacgcataatgca
ggtattaaacctatagtgggtgctgacttttgggttcgtagcccagagtttcctgatgag
ccaagccgcttaaccatattagccaaagacaacgacggctataaaaatattaccttgctg
atatctaaagcgtatcagcgtgggcatgtatttcatcgccctgtgattgaccgcgagtgg
ttagttgagctaaaagcaggcttaattattctctcaggcgctaaagacggtgacttaggt
aaagcgttattaaaaaataatccgactgtaattgaatcggttgttagtttttataagcag
cattttagcgataactactacctagagcttgttcgcaccaatcgaccgcttgaagaagat
tacttgcacatggcggtagagcttgctgctaaagagcagctaccggttgtagcgaccaac
gaagtggtgtttttaaagcccgaaaactttgaagcgcacgaaattcgtgttgctattttt
gatggttacacgctcgatgataagcgccgccctaaacggttctctgaagaacaatatcta
aaaacacctgagcaaatggctgagttgtttagcgatattccagaagccctacaaaatacc
gtagaaatcgctaagcgttgtaacgtaactgtgcaattaggtacttactttttacctgat
tacccaaccggcttgcttaaaattgaagactttttagttaaagtgtcacaagacggccta
gaagagcgactacagtttttattccccgacgaagaagatagaaaagtaaaacgtgttgaa
tacgatgagcgtcttgcaattgagctcggtgtaatcaaccaaatgggattcccaggttac
ttcttaatcgtaatggagtttattcagtggagtaaagataataatattccagttggacct
ggtcgtggttccggtgcgggttcgttagttgcgtacgcgcttaaaattaccgaccttgat
ccacttgagtttgacttactctttgagcgattcttaaaccctgaacgtgtatcaatgccc
gatttcgacgtcgatttttgtatggatagacgagacgaagtaattgatcacgtgtcggct
ttgtatggtcgggatgcggtttcgcaaattattacctttggtaccatggctgcaaaagcg
gtaatacgcgatgtagggcgagtgcttggccatccttacgggtttgttgatcgaatttca
aaattgattccgggtgaccccggtatgacacttgccaaagcgtttgatgtagaaccgcgc
ttgcaagaagcctacgatggcgacaatgaggtaaaagacttaatcgacatgtgtcgcatc
cttgaagggtgtacacgtaatgccggtaaacatgcgggtggcgtagtaatatcgccaacc
actattaccgacttcgctgcgctttattgcgacgacgaaggtaagtttccagtaacacag
tttgataaaaacgatgtagaaacagccggcctagttaagttcgatttcttgggtttacgt
acactgactatattgcagtgggcggtcgatatgaccaatgtgcgcatgaagcgccaaggt
aaagaccccgttgatataaacaccattccactggatgataaaaaaagtattgagttgcta
cttcgcgccgaaacgactgctgtattccagctagagtcgcgtggtatgaaagacttagta
cgccgccttaagcccgactgctttgaagatatgattgcacttgtggccttgttccgccca
ggtccactgcaatcaggcatggtagataactttatcgaccgaaaactgggccgcgaagaa
atctcatacccagatgcgcagtatcagcacgaaagcttaaaaccaatacttgatccaacc
tacggcattattttgtatcaagaacaagtaatgcaaattgcgcaagtactagcaggttac
acgctaggtggcgccgacatgctgcgtcgtgcaatgggtaagaaaaaacccgaagaaatg
gcaaagcagcgttcaacatttgaagatggcgcaagaaataacggcattgacggcgagctt
gcgataaaaatcttcgacttggtagaaaagttcgcaggttacggttttaacaaatctcac
tcagcagcttacgcactcgtatcgtatcaaacattgtggatgaaaacgcatcatcctgca
gagtttatggctgcggtaatgtcggccgatatggataacaccgacaaaatagttattttg
gtggatgaatgtgaaaacatgaagctcaccttattaccaccagacgtaaatgcaggtgag
tttaagtttacagtaaaccttgaaggtgaaattgtttacggcattggcgcgataaaaggc
gtaggtgaggcaccggttgaagcaattttagaagcgcgtgcaaaaggcggcccatttaaa
gatttatttgatttttgtgcccgtgttgatttaaaacgcttaaataaacgtgttactgaa
aaattaatttacgcaggtgctttggatcaattaggaccagagaaaacccaatctgggcgt
gctacattactagctagtttaaaagatgctatgcgtgcggccgatcaacacaacaaagct
gagcaattaggacaaagtgacttatttggtttattagccactgagcctgatgaagttgaa
caagcttttattaaagccacagggcttactgataacgagtggttagatggcgaaaaagag
acgctaggcctttatttaactgggcatccaataaatcagtaccgccgtgagcttaggcat
tacactagcggaaaaatagttgatttacagccaactaatcgtgatgtgtttgcaacggcc
gctggtttggtgattgcttctagagtattaattaataaaaaaggaaatcgttgggcctta
gtaactttagatgacaagagtgcacggattgatgtacgcttgtattcagacgagtttgaa
aagtaccaagatatgctccaagttaacaatatcttggtaatatctggacaggtcagcttt
gataacttctccggtggtattacaatgaccgccagagaaataaacaccattgctcaagcg
cgtgaaaagcgtattaaagcgattaaaatgacgctgaacatggtgcaaatcgaggcaggt
ttcttcgataaattacaaaaagtactcgaaccctataaaatgggaacgtgtccgatcaag
gtttattaccaacgtccagatgcgttggcgcaattaactcttgggatcgaatggtgtgtt
acgccaagtgacgacttaatccataagttatcactaatggctgcgcaagatgtagaacta
gaatttaactaa
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