Pseudoalteromonas sp. LC2018020214: JG479_07005
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Entry
JG479_07005 CDS
T10970
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pslc03032
]
JG479_07005 (topA)
03400 DNA repair and recombination proteins [BR:
pslc03400
]
JG479_07005 (topA)
Enzymes [BR:
pslc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JG479_07005 (topA)
DNA replication proteins [BR:
pslc03032
]
Prokaryotic type
DNA Topoisomerases
JG479_07005 (topA)
DNA repair and recombination proteins [BR:
pslc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JG479_07005 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Toprim_2
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
QQM65550
LinkDB
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Position
1:1581840..1584548
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AA seq
902 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSIGHVRDLPTSGSSKAKVPATKTPAEVRKME
PEEKAAYKKQRDYTNLVARMGIDPEQGWEPHYEILPGKEKVVQELQKLAENADQIYLATD
LDREGEAIAWHLQEIIGGEPEKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTES
ELRLEVTKQAGKAFKPVNEAQASAAVKSLENAEYKVISVEEKPSKSRPSAPLITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVEMCREYVTNEFGAKYLPKDP
INYSSKGNAQEAHEAIRPSSVTVLSGHIEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVAANDFQLKAKGRVLRFDGWTKVQPAVRKKNEEDQSLPAVKEGEILTLVELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFTDLMNFDFTAKMEGRLDDIAEGERVWTQVLDKFYADFSTQLTVAKDEPENGGMRLNE
MVETDIECPTCSRKMGIRTASTGVFLGCTGYSLPPKERCTTTMNLVSGDEAVAADVEDVE
TEKLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACKGHIVEEGTFKIKGYDGPIIECD
KCGSDMELKSGRFGKYFGCNNDECKNTRKLLKNGEAAPPKEDPVHITELECEKSDAYFVL
RDGAAGIFLAANTFPKSRETRAPKVEELKRFRDRISPKFYYLADAPAKDPDGNLAVVRYS
RKNKSQYVMTEVDGKATGWTAHYEAGKWTEEAKKKAAPKKKAAAKKAPAKAKPKAKAKKE
DE
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatat
ttaggtaatgacttcatcgtaaagtccagtattgggcatgtacgtgatttacctacttca
ggttcgagcaaagctaaagtgccggcaactaaaacgccagcagaagttcgcaaaatggaa
cctgaagagaaagcagcgtataaaaagcaacgagattatactaacctggtcgcccgtatg
ggtattgatcctgagcaaggttgggagccgcattatgaaatcctgccaggtaaagagaaa
gttgttcaagaattacaaaagctggctgaaaatgcagatcaaatatacctcgcaacggat
ttggatagagaaggggaagcaattgcttggcaccttcaagaaatcattggcggtgaacct
gaaaagtataagcgcgtagtttttaacgagattaccaaaaacgcaatacaacaagccttc
gaaacgccaggtgagcttaatacagacatggtttacgctcagcaaacacgacgcttttta
gaccgtgttgtaggctttatggtttctcctttgttgtgggcaaaagttgcacgtggtcta
tctgcaggacgagttcagtctgttgcggtacgcttattagttgagcgtgaacgtgaaatt
aaggcatttatccctgaagagttttgggatattcacgctgatgttaagaatactgagtct
gagttacgcttagaagtaaccaaacaagcaggaaaggcatttaagcctgtaaatgaggct
caggctagcgcagctgttaaaagccttgagaatgcagaatacaaagtaattagcgttgaa
gaaaaaccaagtaaaagtcgcccaagtgcgccattaattacttcaaccatgcaacaagcg
gcaagtacacgcctaggttatggcgttaagaagactatgatgctcgctcagcgtttgtat
gaaggcggttatattacttatatgcgtaccgattcaaccaatctttcaaaagatgcggtt
gaaatgtgtcgtgagtatgtaacgaacgagtttggtgctaaatatttaccaaaagatcca
attaactatagctctaaaggtaatgcacaagaagcgcatgaggcaattcgtccttcaagc
gttactgtgttgtctggtcatatcgaaggcgtagatgccgatgctaaaaagctgtatgag
ttaatttggcgtcagtttgtagcgtgtcaaatggtacctgctgaatacgaccttacaaca
ctgactgttgcagctaacgatttccagctcaaagcaaaaggccgcgtgcttcgctttgat
ggttggacaaaagtacaacctgcggtgcgtaaaaagaacgaagaagatcaatcactgcca
gctgttaaagaaggtgaaatacttactttagtagaacttgatcctaagcagcattttact
aagccgccagctcgctttagtgaagctagtttagtaaaagagcttgaaaagcgtggtatt
ggtcgtccatctacttatgcgtcgattatatcaacaattcaagatcgtggttatgtacgt
gtagaaaaccgccgtttctttgctgaaaaaatgggtgaaattgttactgaccgcttagtt
gaaaacttcactgatttaatgaactttgattttacagctaaaatggaaggtcgtttagat
gacattgctgaaggcgagcgtgtatggactcaagttttagataagttttatgctgatttt
tcaacgcaactaactgtcgctaaagacgagccagagaatggcggcatgcgtcttaatgag
atggttgaaaccgatatagaatgtcctacatgtagccgcaaaatgggtatacgtacggct
tcaaccggtgttttcttaggctgtactggttacagccttccgccaaaagagcgttgtact
actacaatgaacttagtgtcgggcgatgaagcggttgctgctgatgtcgaagatgtagaa
accgaaaaattaatgcagatgaagcgttgtcctatttgtgaaactgcaatggactcatac
ctaattgacgaaacccgtaaactacatgtgtgtggtaataacccagcatgtaaagggcat
atagttgaagaaggtacctttaaaattaaaggctacgacggaccaattatcgaatgtgat
aaatgtggctctgacatggaacttaaatcgggtcgctttggtaagtactttggctgtaac
aacgacgagtgtaagaacacacgtaagttacttaaaaatggcgaggctgctccaccaaaa
gaagatcctgttcacattactgaattagagtgtgagaagtcagatgcgtattttgtttta
cgtgatggcgctgcgggtatatttttagccgcaaatacttttcctaagtcacgtgagaca
cgtgcacctaaggtagaagagttaaaacgctttagagaccgtatctcgcctaagttttat
tacttagcagatgcacctgctaaagatcctgatggtaatcttgctgttgtacgctatagc
cgtaaaaataaatctcagtatgttatgactgaagttgacggtaaagctaccggctggact
gctcattatgaagcaggtaaatggacagaagaagcgaagaaaaaagcagcgcctaaaaag
aaagcagctgcaaaaaaggcaccagctaaagctaaacctaaagcgaaagctaaaaaagaa
gatgaataa
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