Pseudoalteromonas sp. LC2018020214: JG479_15120
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Entry
JG479_15120 CDS
T10970
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Pathway
pslc03420
Nucleotide excision repair
pslc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JG479_15120 (uvrD)
03430 Mismatch repair
JG479_15120 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pslc03400
]
JG479_15120 (uvrD)
Enzymes [BR:
pslc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JG479_15120 (uvrD)
DNA repair and recombination proteins [BR:
pslc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JG479_15120 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JG479_15120 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
AAA_11
DUF3553
SAP18
DEAD
Motif
Other DBs
NCBI-ProteinID:
QQM64033
LinkDB
All DBs
Position
1:3383389..3385554
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AA seq
721 aa
AA seq
DB search
MDVSQLLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRSRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTS
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFSAETIRLEQNYRSTATILKASNALIQNNSE
RMGKSLWTDGNDGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGAVSKFVELVEQIEDKISDLTLHEQAK
YTIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEDEEYSSPLQGFLAHTSLES
GEGQAEEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRIKTQVSRPPAAGRFSAS
VSHAAFEDSGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcacaattactcgatggcttaaatgacaaacaacgcgatgccgttgcagcc
ccactacaaaacatgctggtattagcaggtgctgggtctggtaaaacacgagtgttagtt
catcgtattgcgtggcttatgcaagttgagcaagcatctgcttacagtatttttgccgta
acctttactaataaagcggctaaagaaatgcgcagccgcgttgaagaaacactaaaagcc
cctgtaggtggtatgtggattggtacgttccatggtttgtcgcatcgtattttacgtgct
catcaccgtgaagctaacttaccagaagcctttcaaattttagactctgacgatcaactt
cggatgatcaagcgcttattaaaatcgatgaatatcgatgataaaaaatggcccgccaaa
caatttggctggtacatcagcgctaaaaaagatgaagcacttcgccctaaagatattcaa
gcatacgatattaacgagcaaatgatgctgcgtgtttacgccgcctaccaagaggcctgt
gatagagcaggcctagtagattttgccgaaatattactacgcagctacgaagtgttaaaa
aataacccaacgttactgcgtcattatcagcaacgctttgcacatatgctcgtagacgag
ttccaagatacaaataccattcaatatgcttggttaaagttacttgcaggcgatacaagc
agtatcatgattgtaggcgacgatgaccaaagtatttacggttggcgcggtgctaaaatc
gaaaatattaaacgatttttaactgactttagcgcagaaaccattcgtcttgaacaaaac
taccgttcaacagcaactattttgaaagcgtctaatgcattaattcaaaataactcagag
cgtatgggtaaaagcttatggaccgacggtaacgatggcgagccaatttctatttatgcg
gcatttaatgagttagacgaagcacgctttgtaagtagcaaactacgaagctggttaaat
gcaggtaatgccctacaagatgccgcaattttataccgtagtaacgcgcaatctcgtgta
ctcgaggaggccatgctgcaagaaggcttaaaataccgtatttatgggggtatgcgattc
ttcgaacgacaagaaattaaagatgcgttgtcgtacttacgcctagtaggtaatcgtcaa
gacgatgccgcgtttgagcgtgtaattaatacgccagcacgcggtattggcgataaaaca
ttgagccatatacgcgattgtgcacgagcagaatcgttaccgctttggtatgccgcaaaa
gcaattgtagaacaacagcatttatctggtcgtgcttctggtgcagtaagtaagtttgta
gaactcgttgaacaaatagaagataaaattagcgacctaactttgcatgagcaagccaag
tacacaattcaaacctcaggcttgatggcaatgtaccaagccgaaaaaggtgaaaaaggc
cgtgctcgcgtagaaaacttagaagagctaattagcgcttgtgatcagtatgagctgcct
gaagacgaagagtacagctcacctttacaaggctttttagcccatacgtcacttgagtca
ggtgaaggacaagcagaagaacacgaagacgccgtacaaatgatgacgcttcactcagct
aaaggcttagagtttccgctagtgtttatggtaggcgtagaagaaggcatgttcccttct
cagcaaagcaacgaagagtcgggtcgcttagaagaagagcgccgcctttgttatgtaggc
atgacacgagcaatggataagttatacattagccatgctgagagtcgccgtttatacggg
caagaaaaataccatagcccatctcgctttttacgcgaaatccctgaagactgcgtagaa
gaaatccgtattaaaacacaggtttctcgcccgcctgccgctgggcgttttagcgcatca
gttagccatgccgcatttgaagacagtggctttaacttaggacaacgcgtactgcatgct
aagtttggtattggtactgtactgaattatgaaggtagtggcgcacaatctcgcgtacaa
gttaactttgacgaccttggtagcaaatggttagtaacggcctatgcacgattacaagcg
gtataa
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