Pseudoalteromonas sp. LC2018020214: JG479_15155
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Entry
JG479_15155 CDS
T10970
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Pathway
pslc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JG479_15155 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pslc03021
]
JG479_15155 (rpoA)
03400 DNA repair and recombination proteins [BR:
pslc03400
]
JG479_15155 (rpoA)
Enzymes [BR:
pslc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JG479_15155 (rpoA)
Transcription machinery [BR:
pslc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JG479_15155 (rpoA)
DNA repair and recombination proteins [BR:
pslc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JG479_15155 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QQM64037
LinkDB
All DBs
Position
1:complement(3395678..3396664)
Genome browser
AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAINPTRSKIVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVTLEGKDEVFLTLTKSGVGPVTAADIQHDGD
VTIANPDHVICNLTTNNSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDAFVDLRDVTEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttctaaaaccaaggttagtcgacatcgacgctatcaac
ccaacgcgttctaaaatagttttagaaccattagagcgtggctttggccatactctgggt
aatgctttacgccgtatattactttcatctatgcctggatgtgcagtaactgaagttgaa
atcgacggtgtattacatgagtacagcgcgaaagaaggcgttcaagaagacatcattgaa
atactattaaaccttaaaggtttagcagtaacgttagaaggcaaagatgaagtttttctg
accctgactaaatctggtgtaggccctgttactgcggctgatattcagcacgatggcgat
gtaacaattgctaatccagatcacgttatttgtaatttaactacaaataacagcgagatc
agcatgcgtattcgtgttgaacgtggtcgtggttatgtgccggcatctagtcgtttatcc
tctgatgacgatgagcgtccaattggtagattgttgcttgatgcatcatttagcccagtt
gaacgtattgcgtactcggttgaatcagctcgagttgagcaacgtacagatttagacaag
ttaatcattgatatggaaacaaacggcactttagatccagaagaagcgatccgccgtgcg
tctactatcttagctgagcaattagatgcattcgtagatttacgtgatgtaactgagcca
gaagagaaagaagagaagccagaattcgatcctattctacttcgtccagttgatgatctt
gaattaacagtacgctcagcaaattgtttgaaagccgagcaaattcaatatatcggtgat
ttagttcagcgcactgaagttgagcttcttaaaacgcctaatttaggtaagaagtctcta
actgaaattaaagacgtgctagcttcacgtggactttctctaggcatgcgcctagaaaat
tggccacctgcaagcttagctgaataa
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