Pseudoalteromonas sp. LC2018020214: JG479_15900
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Entry
JG479_15900 CDS
T10970
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Pathway
pslc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JG479_15900 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslc03019
]
JG479_15900 (rhlB)
Enzymes [BR:
pslc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JG479_15900 (rhlB)
Messenger RNA biogenesis [BR:
pslc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JG479_15900 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QQM64172
LinkDB
All DBs
Position
1:complement(3547641..3548918)
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AA seq
425 aa
AA seq
DB search
MTKTHLTDKKFSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKT
LAFLTATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGED
YEKQRAQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMF
DRMPDTSKRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDK
IKLLLTLIEEEWPEKAIVFANTKHSCETVYAWLKSDGHRVGMLTGDVNQKKRQTILAQFS
KGDLDFLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQ
YAYNLHEIEEYIEHSIPLSHYDKTALLDDLTQPIIQRKRNYSTGPRNRSNNSGRRPNNSY
QKGRS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttaaccgataaaaagttttcagactttgctatcgcaccggaagtg
gttgccggtttaaccgagaatgggtttgaatattgcacacctattcaagcaaaatgccta
ccttttatttgtgatggacgcgatatcgcgggccaagctcaaacgggtacaggcaaaacg
ttggcgtttttaaccgccacgtgccatcggttattacaatctagcaaagcacctagtaaa
catccaagagccctgatcatggcccctactcgggagcttgcgattcagatacacaaagat
gctaaaattttagcgccgcactgtaatcttaacttaggtttagtatatggtggcgaagat
tacgaaaaacaacgtgcacaactagaaaaaggcgttgatattttaattggtactacaggt
cgcctaattgatctgtataagcaaggctgttacacccttaatgaaattgaggtagtcgtg
ctggacgaagccgatcgtatgttcgatttaggttttatcaaagatattcgctatatgttc
gatcgtatgccagatacatcaaagcgtttaaacttattattttctgccacattatcgtac
cgcgtacaagaattagcttttgagcacatgacaaacccagagcatgttcaaattgaacct
gacgttaaaacgggtaaacgtattcaagaagagctatttcatccttcgcaagaagataaa
attaagctgttgttaaccttaattgaagaagaatggccagagaaagcaatcgtgtttgca
aataccaagcacagttgtgaaacagtatatgcttggcttaaatcagacggtcatcgtgta
ggtatgcttactggtgatgtaaaccagaaaaaacgccaaactatattagcgcaattcagc
aaaggtgatttagactttttagttgcgaccgatgttgcagcgcgtggtcttcatattcca
gaagtaagtcatgtgtttaactttgatttacctgacgattgtgaagattatgttcatcgt
attggccgtactggccgcgctggtgcatcaggccacgcaattagttttgcatgtgagcaa
tatgcatacaacctgcatgaaattgaagaatatatagagcacagcattcctttatcacat
tatgataaaacagcattgctagatgatttaactcagcctattattcaaagaaagcgcaac
tattcaacaggtccacgtaaccgtagtaataacagcggacgtcgcccaaataatagttac
caaaaaggacggtcgtaa
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