Pseudoalteromonas sp. LC2018020214: JG479_17555
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Entry
JG479_17555 CDS
T10970
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pslc Pseudoalteromonas sp. LC2018020214
Pathway
pslc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JG479_17555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslc03019
]
JG479_17555
Enzymes [BR:
pslc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JG479_17555
Messenger RNA biogenesis [BR:
pslc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JG479_17555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Cas3-like_C_2
AAA_19
Flavi_DEAD
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QQM66395
LinkDB
All DBs
Position
2:complement(245309..246613)
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AA seq
434 aa
AA seq
DB search
MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII
QKLVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANAL
KEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQ
ILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGK
KNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVAT
EVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIET
LIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATGEARAVNRSRISSV
RKSLKGEKLSLKKS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaatcttttagtttcgctcctgaaatcatccaggcgttggacgaacttaac
tatcacactcttacgcccattcagcgcgcagcaatccctgctgttcgtaaaggtaaagac
gttttagccagtgcacaaactggtaccggcaaaactgccgcgtttgctttacctatcatc
caaaaattggttgagtctgaactcagcacaacgaatgcacctcatgcgttagtacttgct
ccaacgcgtgaacttgcagaacaaattgcaaataattttagagattttgcaaagcataca
tcacttaaagtcgttagtttattcggtggtgttagtaccgccggccaagcaaatgcttta
aaagaaggtgtagatattgttgttgcaaccccaggtcgtttatttgatcatattcgctta
ggtaacttgagccttgcaagtgttaagcaccttgttcttgatgaagctgaccgtatgctt
gatatgggctttattgaagacatgcaaaacgtgattaaaagctgtgcagaagagcgccag
attttacttttctctgctactttccctgcagcaattaaacaatttgcatctaaagtatta
aaacaagctgaaatagtgcgtgttgatcaaactaacagtacagcaagtactgttgagcat
gttgtttaccctgttgaagaacgtcgtaagcaagagctactttctgaattgattggtaag
aaaaactggcaacaagtgcttgtatttgtaaacatgaaagaaacggctgacgagcttgtt
aaagagcttaaccttgatggtattccggcaggcgtttgccacggtgacaaatctcaaggt
aaccgtcgtcgtgctttacgtgaatttaaagaaggcaaagtacgtgtattagtagctaca
gaagtggctgctcgcggtattgatattgatggtttacctcgtgtaattaatattgattta
ccatggcttgcagaagattacgttcaccgcattggccgtacaggtcgtgctggtcgtcaa
ggtcaagcaatctcatttgttagccgcgaagaagaaaacactttgtttgaaattgaaacg
ttaatcggtcaaaaaatcaaacgtgtatatttagaaggttacgaagtgagtaaccgtgaa
gtactcattgataaaattggtaaaaaaccagcgcatttacgccgtacacgttctaacaag
ttatcaggacaagcaaccggtgaagcgagagcagtaaatcgctcacgtatttcaagcgtt
cgtaaaagcttaaaaggcgaaaaactgtcacttaaaaagtcatag
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