Pseudomonas sp. LPH1: BHQ29_02105
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Entry
BHQ29_02105 CDS
T10175
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BHQ29_02105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pslp03021
]
BHQ29_02105
03400 DNA repair and recombination proteins [BR:
pslp03400
]
BHQ29_02105
Enzymes [BR:
pslp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BHQ29_02105
Transcription machinery [BR:
pslp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BHQ29_02105
DNA repair and recombination proteins [BR:
pslp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BHQ29_02105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
AQZ32190
LinkDB
All DBs
Position
464480..468679
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLDHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFKDSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETIKEKDGSITKNTRIVDTTVGRALLFQIVPAGLSYDVVNQSMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEPVVDREGKTVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVFKPGTEDVIVPAGTLIDEQWVEFIELNSVDEVVVRSPITCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKHVERVDGNLVAVSRSGELAVADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQIAVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQMELTQVLGENERLAEEDKFVAKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcagatcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagccagagcgcgacggcctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtggccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccatatctggttcctgaagtcgctg
ccgtcgcgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgtgctctat
ttcgagagctacgtcgtgatcgatccgggcatgaccaccctcgagaaaggccagctgctg
aacgacgaacagtacttcgaagccctcgaagagttcggtgacgacttcgacgcgcgcatg
ggcgccgaagccgtgcgcgaactgctgcacgccatcgacctggatcacgagatcggccgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttcaaggactccggcaacctgcctgagtggatggtgctgacc
gttctgccggttctgccgccggatctgcgtccgctggtaccgctggacggtggccgcttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctcaag
cgcctgctcgatctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttcggttattaccgtcggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgcgaagaagatg
gtcgagcgcgagctgccggaggtttgggacgttctcgctgaagtgatccgcgaacacccc
gtcctgctcaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccagta
ctgatcgaaggtaaggcgattcagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccgtgaacgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgatcgcgtgttccgcgccggc
gaagcgtccctgcacgcccgcgtgaaagtgcgtatcaacgaaaccatcaaagagaaagat
ggttcgatcaccaagaacacccgcatcgtcgacaccaccgtcggccgcgcgctgctgttc
cagatcgtaccggccggcctgtcttacgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcaccgttggtctgaaggacaccgtcatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggacgagaaggcgcgcatcatcgacgccgccaccgaggaa
gtgaaggaaatcgaatcgcagtacgcctccggcctggttacccagggcgagaagtacaac
aaggtgatcgacctctggtcgaaggccaacgatgaagtgtccaaggcgatgatggccaac
ctctcgaaagagccggttgtcgatcgcgaaggcaagaccgtcgagcaggagtccttcaac
tccatgtacatgatggcggactccggtgcgcgtggtagcgccgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgcgaaggtctgtcggttctgcagtacttcatctccacccacggtgcgcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtcgacgtggcgcaggatctggtggtgaccgagatcgattgcggtaccgagcacggtctg
ctgatgacgccgcacatcgaaggcggcgacgtcgtcgagccgctgggtgagcgcgtactg
ggtcgagtgattgccaaggacgtgttcaagccaggcaccgaggacgttatcgtcccggcc
ggtaccctgatcgacgagcagtgggtcgagttcatcgagctgaacagcgtcgatgaagtg
gtcgtgcgttcgccgatcacctgcgaaacccgcttcggcatctgcgccaagtgctacggc
cgcgatctggcccgtggtcaccaggtcaacatcggtgaggcggtcggcgttatcgctgcg
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggtggtgcgatccgcctg
cacaacctgaagcacgtcgagcgcgtggacggcaacctggtagcggtttcccgctccggc
gagctggctgtggctgacgagttcggtcgcgagcgcgagcgttacaagctgccgtacggt
gccgtgatttccgtgaaggaaggcgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtaccgtgaccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactgactggtctgaccaacatcgag
gttctcgatccgaaggatcgtccggctgctggcaaggacattcgtccggccatcaagatg
gtcgatgccaacggcaaggaactgctgctgccgggtaccgacgttcccgctcagtacttc
ctgccagccaacgccctggtcggtgtggctgacggtgcgcagatcgcggtcggtgacgtc
atcgcccgtattccgcaagagacctcgaagactcgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaggaagcttcgatcctggcggaaatcagc
ggcaccatttcgttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggcagtgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccgcacgatatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgaagtcagcgagtccggcgattcgtccttcatcaagggcgatcagatg
gagctcacccaggttctgggcgagaacgagcgtctggccgaagaggacaagttcgtcgcc
aagtacacccgcgtactgctgggtatcaccaaggcgtcgctgtccaccgagtcgttcatc
tcggcagcgtccttccaggaaaccactcgcgtcctcaccgaggcggcggttactggcaag
cgcgactacctgcgtggtctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgcagacaagccggtacga
gtcagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggaaattga
DBGET
integrated database retrieval system
