Pseudomonas sp. LPH1: BHQ29_05035
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Entry
BHQ29_05035 CDS
T10175
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03410
Base excision repair
pslp03430
Mismatch repair
pslp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BHQ29_05035
03430 Mismatch repair
BHQ29_05035
03440 Homologous recombination
BHQ29_05035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pslp03400
]
BHQ29_05035
DNA repair and recombination proteins [BR:
pslp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BHQ29_05035
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BHQ29_05035
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BHQ29_05035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AQZ32701
LinkDB
All DBs
Position
1085579..1087288
Genome browser
AA seq
569 aa
AA seq
DB search
MRIEARPLPAQLPDLGNLPPLLTRLYAARGVQSAEELDKGLARLIPYQQLKGIGAAVELL
VLALEQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALERQPDLLLTVDNGISSVDGVAAAKAAGLTVLVTDHHLPGPELPAADAIVNPNQPGCDF
PSKAMAGVGVMFYVLLALRARLRETGWFASRAEPNLGELLDLVALGSVADVVPLDANNRI
LVHQGLARIRAGRARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCDDEALARDMAVQLDQLNQDRKVIEQGMQREALAQLKDLPVQDMPFGLCLFEPDWHQG
VIGILASRLKERYHRPAIAFADAGEGMLKGSARSVPGLHIRDALDAVAAKHPGLISKFGG
HAMAAGLSLPQANFGAFAAAFDAEVRRQLCEDDLTGRLLSDGQLDATEFHLELARALRNA
GPWGQHFPEPLFHGVFQIVNQRIVGERHLKLVLKTECGSVQLDGIAFNIDREVWPNPTLR
WAEVAYKLDLNEFRGNETVQLMVAHIAPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaagcccgtcccttacccgcgcaactgcccgacctgggcaacctgccgcca
ctgctgacccgtctctacgccgcccgtggcgtgcagtctgccgaggagctggacaagggc
ctggcgcggttgatcccgtatcagcagctcaagggcatcggggcggcggtcgaactgctg
gtgctggcgctcgaacagcgccagcgcatccttatcgtcggcgacttcgatgccgatggc
gccaccgccagtacggtcggggtgctcggcctgcgcctgctcggtgcagcgcatgtggat
tacctggtgcccaaccgcttcgagtacggctatggcctgactccggagattgtcgccgtg
gcgctggagcgtcagcccgacctgctgctgaccgtggacaacggcatctccagcgtcgat
ggcgtggcggcggccaaggcggccgggctgacggtgctggtgaccgaccaccacctgccg
gggccggaactgccggcggccgatgccatcgtcaaccccaaccagccgggctgcgatttc
cccagcaaggccatggccggcgtcggcgtgatgttctacgtgctgctggcgttgcgcgcg
cggctgcgcgagaccggctggttcgccagccgtgcggagcccaatctgggcgagttgctc
gacctggtggcactgggcagcgtcgccgacgtggtgccgctggatgccaacaaccgcatc
ctggtgcaccagggcctggcgcgcattcgtgccgggcgggcgcggcctggcttgcgtgcg
attctcgaagtcgccgggcgcgaccaccgccgtatcacctccactgatctggggttcatc
ctcggcccacggctgaatgcggccgggcgcctggacgacatgagcctcggcatcgagtgc
ctgctttgtgacgacgaggccctggcccgcgacatggcggtgcagctcgatcagctcaac
caggatcgcaaggtcatcgagcagggcatgcagcgcgaggcgctggcgcagctcaaggac
ctgccggtgcaggacatgccgttcggcctgtgtctgttcgagccggactggcaccagggg
gtgatcggcatcctcgcctcgcgcctgaaggagcgctatcaccgcccggccatcgccttt
gccgatgctggcgagggcatgctcaagggctcggcgcgctcggtgccagggctgcatatc
cgtgatgcactggatgccgtggcggccaagcatccggggctgatcagcaagtttggcggg
catgccatggctgccgggctgtcactgccgcaagccaacttcggcgcctttgctgcggcc
ttcgacgctgaggtacgtcgtcagctctgcgaggacgatctgaccggccgcctgctgtcc
gacggccagctcgatgccaccgagttccacctggaactggcccgcgctttgcgcaacgcc
ggcccctggggccagcactttcccgagccgctgttccatggcgtgttccagatcgtcaat
cagcgcatcgtcggtgagcgtcatctgaagctggtgctcaagaccgaatgcggcagcgtg
caactcgacggcatcgctttcaacattgaccgtgaggtctggcccaacccgacgctacgc
tgggcggaagtggcgtacaagctcgacctcaacgagtttcgtggcaatgaaacggtgcaa
ctgatggtggcgcatatcgctccgcgttga
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