Pseudomonas sp. LPH1: BHQ29_09380
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Entry
BHQ29_09380 CDS
T10175
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BHQ29_09380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pslp03400
]
BHQ29_09380
Enzymes [BR:
pslp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BHQ29_09380
DNA repair and recombination proteins [BR:
pslp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BHQ29_09380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
PaaX_C
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AQZ33473
LinkDB
All DBs
Position
2067118..2070747
Genome browser
AA seq
1209 aa
AA seq
DB search
MNQQRPLALTFPLHGSRLIEASAGTGKTFTISALYLRLILGHGDDAAFREPLLPPQILVV
TFTDAATRELRDRIRARLVEAATVFRGDAQGDDLLRELRGDFTQTQWDECARRLELAAQW
MDEAAVSTIHGWCQRMLREHAFDSGSLFSQTLETDHSELLAEVVRDYWRQHGYPLQGAAL
QWVASVWGTPDGLGARLRPLLGEEGEGTTQSLGELLDNALQQREQALAELKAPWLSWADE
LQLLLDAAVAAKQVDGKKIQARFYNPWLAKLREWAGSEEPRLDLGTGFTRLTPDGLAEAW
KGEAPDHPALGAMALLKAQLDALPDPVDAALHHAAAWVCQRFDWEKRQRAEMGFDDMLVR
LDAALQGSNGPRLAEVIRRQFPVALIDEFQDTDPLQYRIFDTLYEVEANRDDCGLFMIGD
PKQAIYSFRGADIHTYLRARRATNGRHYNLERNFRSSQAMVDAVNGVFLRAEQRDGGEGA
FLLRDDLPFIEVGAQGRGEVWSVDGQAQPALTVWHLTSDEPVAKGAYLDAMAAGAASEIV
RLLDLGQRGQAGFIKDGVLSALRPSDIAVLVRDFNEAQAIRGELAVRGVRSVYLSDKDSV
FAAQEARDLLLWLRACAEPDQDRPLRAALASATLGLELAELEQLNLDERTWERRVMQFRD
YRQRWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLLHLAELLQQAAAELDGELAL
IRHLSELLAGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFICAFRPVDDKK
PLQIHDGERRRLVLKADGDSLERAERERLGEDLRLLYVALTRARHACWLGVADLKIGNGK
KSRLHESALGYLLGGGEPLMASAGLADWLAPFVDGLESAVAPVPPASEQRYRMLEERQFE
PHWRTPIRRAAEHWWIASYSALRLDEDAPSQVSRHEDAAPDSPAMQNAIDDEDTLLALAP
LPASAQGLHRFPRGPNPGTFLHGILEMAAQEGFATLAQDPLRLREALARRCQRRGLQSWI
DPLQDWLLALLSQPLPLAGADSVVLAQLTQYQPELEFWFEARGVDVRLLDQWVQQCELPG
LARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGSDDSAYTREAMEMAIASHRY
DLQYVLYVLALHRQLRLRLPDYDYDRHLGGALYLFLRAPQQGAYLARPPRELIERLDVLF
MGEAEEGVA
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaacagcgccctttggccctgacgtttcccctgcatggcagccgtctgatcgag
gccagtgctggaacgggcaagacgttcaccatttccgcgctctacctgcgactgatcctc
ggccatggcgacgacgctgcattccgcgagcctctgttgccgccacagattctggtagtg
accttcaccgatgccgcgacgcgcgaactgcgcgatcggattcgcgcgcgcctggtcgag
gccgcgaccgtattccggggcgatgcccagggagatgacctgctgcgcgagttgcgcggt
gatttcacccagacgcaatgggacgagtgcgcccgccgcctggagctggcggcgcagtgg
atggacgaggcggccgtatccaccatccacggctggtgtcagcgcatgctgcgcgagcat
gccttcgacagcggcagcctgttcagccagaccctggagaccgatcacagcgagctgctg
gccgaagtggtacgcgattactggcggcagcacggctatccgctacagggcgctgcgttg
caatgggtcgcaagcgtgtgggggactcctgatggtctcggcgccaggctacgtcctctg
ctgggcgaggagggtgaagggacgacgcagtcgctgggcgagctgctcgataacgcgctg
cagcagcgcgagcaggcacttgccgagctcaaggcgccctggctgagctgggccgatgag
ctgcagctgctgctggatgctgctgtggcggccaagcaggtggacggcaagaaaatccag
gcgcgcttctacaatccctggctggccaagttgcgcgagtgggccggtagcgaagaaccg
cgcctcgacctgggcaccggtttcacccgcctgaccccagatggcctggccgaagcctgg
aagggcgaggcgcctgatcatcccgcgctgggcgccatggctttgctcaaggcgcaactc
gatgcgctgcccgacccagttgatgccgctctgcaccacgcggcggcttgggtttgccag
cgcttcgactgggagaaacgccagcgcgcggagatgggcttcgacgatatgctcgtgcgc
ctggacgctgccctgcaaggcagcaatggcccgcgcctggccgaggtgatccgccgccag
ttcccggtggcgctgatcgacgagttccaagacaccgacccgctgcagtaccgcatcttc
gatacgctctacgaggtcgaagccaatcgcgacgactgtggcctgttcatgatcggcgac
cccaagcaggccatctattccttccgtggcgccgacattcatacctacctgcgtgcgcgc
cgtgcaaccaatggccggcattacaacctggagaggaactttcgctccagccaggccatg
gtcgatgccgtcaacggcgttttcctgcgggccgagcagcgtgacggcggcgagggggca
ttcctgctgcgtgacgatctgccttttatcgaggtgggcgcgcaggggcgaggcgaagtc
tggagcgtcgacggtcaggcgcaacccgccctgacggtgtggcatctgacgagtgacgag
ccagttgccaagggggcctatctggatgccatggcggccggtgcggccagcgagatcgtg
cgtctgctggatctgggccagcgtgggcaggcgggtttcatcaaggacggcgtgctgagt
gctctgcggcccagcgatatcgccgtgttggtgcgtgatttcaacgaggcgcaggccatt
cgcggcgagctggctgtacgcggcgtacgcagtgtgtatctttccgacaaggattcggtg
ttcgccgctcaggaggcacgcgatctgctgctgtggctgcgcgcctgcgccgagccggat
caggatcgcccgctgcgcgcggcactggccagcgcgacactggggctggagttggccgag
ctggagcagctcaacctcgacgagcgcacctgggagcgccgcgtcatgcagtttcgcgac
tatcgccagcgctggcagcgtcagggcgtgctgccgatgctgcgtcagttgctgcaagac
ttcgagctgccgcagcggctgatgggacgtgacgatggcgagcgggtattgaccaacctg
ttgcatctggccgagctgctgcaacaggccgccgctgaactcgacggcgaactggcgctg
attcgtcacctgagcgagctgctggccggcgaagggcaagccgccgatgagcaggtgctg
cgcctggagagcgacgaggcgctggtgcgcgtggtgaccatccataaatccaaggggctg
gagtaccccctggtgttcctgccgtttatctgcgccttccgtccggtagatgacaagaaa
ccgctgcagattcatgacggcgagcgccgccgcctggtgctcaaggccgatggcgacagc
ctggagcgcgccgagcgcgagcgtctgggtgaagacctgcgtctgctctacgtggcgttg
acccgtgcccggcatgcctgctggctgggcgtggcggatctgaagatcggcaacggcaag
aagtcgcgcctgcatgagtcggccctgggctatctgctaggtggcggcgagcctctgatg
gctagtgccgggcttgctgattggctcgcgccatttgtcgacgggctcgaaagtgcagtg
gcgccggtaccgccggccagcgagcagcgctaccgcatgcttgaggagcggcagttcgag
ccgcactggcgcacgccaatacgacgcgccgccgaacattggtggattgcctcctacagt
gctctgcgtctggacgaggacgcccccagtcaggtcagtcgtcatgaagacgccgcgccc
gacagcccggcgatgcagaacgccatcgatgatgaggatacgttgctggcgctggcgccg
ctgccggcatccgctcagggcctgcatcgcttcccgcgcgggccaaaccccggcaccttc
ctgcacggcatcctggaaatggcggcgcaagaagggttcgcgacccttgcgcaggaccca
ctgaggctgcgcgaggcgctggccaggcgctgccagcggcgtggtcttcaaagctggatc
gatccgctgcaggactggctgctggcgctgctgagccagccgctcccactggcgggcgcg
gatagcgtggtgctggctcaactgacgcagtatcagcctgagctggagttctggttcgaa
gcgcgtggggtcgatgtcaggcttctggatcagtgggtgcagcagtgcgagttgccgggc
ctcgccaggcagccgctgcgtgccgacactctcaacggcatgttcaagggctttatcgat
ctggtattcgaacatcaggggcgttactacgtggcggattacaaatccaactggctcggc
agcgacgacagcgcctatacccgtgaagcgatggaaatggccatcgccagccaccgctat
gacctgcaatacgtgctctacgtgttggccctgcatcggcagttgcgtctgcgactgccg
gattacgactacgaccggcatttgggcggcgcgctctacctgttcctccgtgcgccgcag
caaggcgcctacctggcgcgaccgccgcgcgagttgatcgagcgtctggacgtgctgttc
atgggcgaagccgaggagggcgtagcatga
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