Pseudomonas sp. LPH1: BHQ29_11135
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Entry
BHQ29_11135 CDS
T10175
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHQ29_11135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslp03019
]
BHQ29_11135
03009 Ribosome biogenesis [BR:
pslp03009
]
BHQ29_11135
Enzymes [BR:
pslp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BHQ29_11135
Messenger RNA biogenesis [BR:
pslp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHQ29_11135
Ribosome biogenesis [BR:
pslp03009
]
Prokaryotic type
rRNA helicases
BHQ29_11135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
TrkA_N
AAA_22
HrpB7
Motif
Other DBs
NCBI-ProteinID:
AQZ33785
LinkDB
All DBs
Position
complement(2468223..2469914)
Genome browser
AA seq
563 aa
AA seq
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MTQEIGGFAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAF
ALPLLSKIDTAKREPQVLILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLL
EVEDFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVGEVKLPNAQQVLDARIKKLTNSLAPLVADAEASHGDLLDRLTADIGCSPRAL
AAALLKKATNGQALDLATVEREQPLVPGAGGAPRERRERDGERSDRGGERGEFRERRAPV
PLTEGRVRCRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLVELPEDGLDR
LLGKLKDTRVAGKALKLRRYRED
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgcgctcggacttcaccccaatattctcgccgct
ctgaccgctgtcggttacgaagagccgtctccgatccaatcgcaggccattccggtgatt
ctcgccggccacgacatgatcggccaggcgcagaccggtaccggtaaaaccgcagccttc
gcgctgccgctgctgtcgaaaatcgacactgccaagcgcgagccgcaggtgctgatcctg
gcgccgacccgcgagctggccctgcaggtcgctaccgccttcgaaacctattccaagcag
atgcctggcctgaatgtcgttgccgtatacggcggcgcgcccatgggcccgcagctcaag
gccattcgccagggcgctcaggtcatcgtcgctacccctggtcgcttggtcgaccacctg
cgtcgtgacgagaaagtgctgtccaccattcagcacctggtgctcgatgaagccgacgaa
atgctcaagctgggcttcatggatgacctcgaagtgatcttcgaagccatgccggaaagc
cgccagagcgtgctgttctccgccacgttgccgcactcgattcgtgccattgccgaaaag
cacctgcgtgagccgcaacacatcaagatcgctgccaagacccagaccgtctcgcgcatc
gagcaggcgcatctgatgatccacgccgaccagaagaccaacgccgtgctgcgtctgctg
gaagtcgaggatttcgacgcgctgatcgccttcgtgcgtaccaaacaagccaccctggac
ctagccagcgccctggaagccaaaggctacaaggcggctgcgctgaacggtgatattgcc
cagaaccagcgcgagcgcgtcatcgaatcgctcaaggatggccgtctggacatcgtcgtg
gcaaccgacgtggctgcccgtggtatcgacgtgccgcgcatcacccacgtattcaacgtc
gacatgccgtacgacccggagtcctacgtgcaccgtatcggtcgtaccggccgtgccggt
cgtgatggtcgtgcgctgctgctggtgacgccacgtgagcgtcgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaggtcggtgaggtcaagctgccgaacgcccagcaggtgctc
gatgctcgcatcaagaaactgaccaacagcctggcgccgctggtggccgatgccgaagcc
agccatggcgatctgctcgaccgtctgaccgccgatatcggctgcagcccacgtgctttg
gccgctgcgctgctgaaaaaggctaccaacggccaggctctggatctggccactgtcgag
cgcgagcagccactggtgccgggcgctggcggcgctccacgtgagcgtcgtgaacgtgac
ggcgagcgtagtgatcgtggcggtgaacgcggcgaattccgcgaacgccgcgcgccggta
ccgctgaccgaaggtcgcgtgcgttgccgcactgcgctgggtactcgtgacggtatcgcc
gcgaagaatctgctcggtgccatcctcaatgagggtggcctggctcgcgaagcgatcggt
cgtatccagatccgcgaaaccttcagcctggtcgagctgccggaagacggtctggaccgc
ctgctgggcaagctgaaagatacccgcgtggccggcaaggctctgaagctgcgtcgttac
cgcgaggattga
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