Pseudomonas sp. LPH1: BHQ29_12330
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Entry
BHQ29_12330 CDS
T10175
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03030
DNA replication
pslp03430
Mismatch repair
pslp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BHQ29_12330
03430 Mismatch repair
BHQ29_12330
03440 Homologous recombination
BHQ29_12330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pslp03032
]
BHQ29_12330
03400 DNA repair and recombination proteins [BR:
pslp03400
]
BHQ29_12330
Enzymes [BR:
pslp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BHQ29_12330
DNA replication proteins [BR:
pslp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BHQ29_12330
DNA repair and recombination proteins [BR:
pslp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BHQ29_12330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_5
AAA
RuvB_N
AAA_5
AAA_22
ResIII
AAA_14
AAA_30
AAA_19
AAA_18
AAA_16
AAA_2
PIF1
TsaE
nSTAND3
DUF3646
AAA_7
Rad17
SKI
zf-CXXC
Herpes_Helicase
Motif
Other DBs
NCBI-ProteinID:
AQZ34004
LinkDB
All DBs
Position
complement(2719367..2721445)
Genome browser
AA seq
692 aa
AA seq
DB search
MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK
CLNCETGISSTPCGTCSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPSRGRF
KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFSLKNMPP
ERVVEHLTHVLTAENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAM
LGTLDHGQVYGVLHALIEGDARALIEAVRHLAEQGPDWNGVLSEMLNVLHRVAIAQALPE
AVDNGQGDRERVLQLAQALPAEDVQFYYQMGLIGRRDLPLAPEPRGGFEMVLLRMLAFRP
AGADDAPKVTLKPLGISQATADSQHNPVAGTAMPAPVVSAPVIAPVAQAPVVTAAVEPTP
VVPAASVMPGVTEPVQPVEVSVASVANLPAEPEPEPEPAAPVVDVPWATAEPVAEPVPPV
APVEPEVNTAEPLVAQVASVEVPAPSEVAPPLADVDGGEDEPPLGDYDYVEMDAETLDYD
FGQAEAATPAVEEPLPAAKPATGLAAEWLSLFPQLGLGGMTGSIAANCTLIEANGDDWLL
HLDPAHSALFNPTQQRRLNDALNQQQGRSIKLRIELCKPEQETPAQAAARRRADRQRSAE
ASIHADPLVQQMIQQFAAKVRDDSIEPIDIPS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaggttcttgcacgtaaatggcgtccgcgctcgttccgcgaaatggtcggc
cagacgcatgtgctcaaggccctgatcaacgccctggacagccagcgcctgcaccatgcc
tacctgttcaccggcacccgcggtgtgggcaagaccactattgcgcggatcatcgccaag
tgcctgaactgcgaaaccggcatcagttccaccccttgcggcacctgttcagtatgtcgg
gaaatcgatgaggggcgtttcgtcgacctgatcgaagtggacgccgccagccgcaccaag
gtcgaagacacccgtgagctgctcgacaacgtgcagtactcgccgagtcgcggtcgcttc
aaggtctacctgatcgacgaagtgcacatgctctccaccagctccttcaacgccctgttg
aagaccctggaggagccgccgccccacgtcaaattcctgctcgccaccaccgacccgcag
aagctgccggttaccgtgctgtcgcgctgcctgcagttctcgttgaagaacatgccgccg
gagcgggtggtcgagcacctgacccatgtactgaccgccgagaacgtccccttcgaggac
gatgccctgtggttgctcggtcgtgctgccgatggctcgatgcgcgacgccatgagcctg
accgaccaggcgattgccttcggcgagggcaaggtgctggcggccgacgtgcgcgccatg
ctcggtacgctcgaccatggtcaggtttacggcgtgctgcatgcgctgatcgagggcgat
gcacgagctctgatcgaggcggtacgtcatctcgccgagcaggggccggactggaatggt
gtgctgtctgagatgctcaacgttctgcaccgtgtcgcgattgcccaggcgctgccggag
gccgtcgacaacggccagggcgaccgcgagcgtgtgctgcaactggcccaagcgctgcca
gccgaggatgtgcagttctactatcagatgggtttgatcgggcgtcgtgatttgcccctg
gcacctgaaccgcgcggtggcttcgagatggtgctgctgcgcatgttggccttccgcccg
gcgggagccgacgacgcgcccaaggtcacgctaaagcccttggggatcagccaggccact
gctgattcccaacataacccagtggccggcaccgctatgccggctcctgtggtttctgct
cctgttatcgctcctgtcgcacaggctcccgttgttacggcggcggtcgagcctacccct
gttgtgccggcagcgagcgtcatgccaggcgtgactgagccggttcagcctgttgaggtg
tctgtagcttcggtcgctaacctgcccgccgagcccgagcccgagcccgagcccgcagct
cctgtggttgatgtgccttgggcaactgccgagcctgtggctgagcccgttccgcctgtt
gcgccggtagagccagaggtgaacaccgcagagccattagttgcgcaagttgcatcggtc
gaagtgcctgcaccgagtgaggtcgcgccaccgctagccgatgtagatggtggtgaagac
gagccaccgctcggcgactacgactatgtggaaatggacgccgaaaccctcgactacgat
ttcggccaagccgaagccgcgacgcctgcggtcgaagaaccactaccggccgccaagccg
gctaccggtctggcggcagagtggctgtcactgtttccgcagcttggcctgggcggcatg
actggcagcatcgccgccaactgcacgctgatcgaagccaacggtgatgactggctgctg
cacctggacccggcgcacagtgcgctgttcaatccgactcagcagcgtcgtctgaatgac
gcgctgaaccagcaacaggggcgcagcatcaaactgcgtatcgagctgtgcaaacctgag
caggaaaccccggcgcaggccgcagcccggcgccgtgccgaccgccagcgcagcgccgag
gcgtcgatccatgccgacccgctggtgcagcagatgattcagcagttcgccgccaaggtg
cgtgacgacagcatcgaacctatcgatattcccagctaa
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