Pseudomonas sp. LPH1: BHQ29_13115
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Entry
BHQ29_13115 CDS
T10175
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHQ29_13115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslp03019
]
BHQ29_13115
03400 DNA repair and recombination proteins [BR:
pslp03400
]
BHQ29_13115
Enzymes [BR:
pslp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHQ29_13115
Messenger RNA biogenesis [BR:
pslp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHQ29_13115
DNA repair and recombination proteins [BR:
pslp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BHQ29_13115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r4_2
HTH_23
GerE
Transposase_mut
Motif
Other DBs
NCBI-ProteinID:
AQZ34133
LinkDB
All DBs
Position
complement(2893316..2895448)
Genome browser
AA seq
710 aa
AA seq
DB search
MLDHAMRILKDVFGYDAFRGNQAAIIERVAGGGDALVLMPTGGGKSLCFQVPALMREGLA
VVVSPLIALMDDQVATLDELGVAAVALNSTLSPDEQREIADRIRRGQIKMLYLAPERLVQ
PRMLSFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADKRT
REEIVQRLHLDNAERFLSSFDRPNIFYRIQPKDQPRKQLLGFLAARKGDAGIVYCLSRKK
VEEVAEFLSSQGFPALPYHAGLPNELRAFNQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
CHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRIEQHK
LDAMLALCEETRCRRQALLVYFDEELPNPCGHCDNCIDGVETWDATEPARQALSAVYRSG
QRYGVGHLVDILLGRDNEKIRAAGHQHLAVFGVGKGFSEVEWRTLFRQLVARGLADVDLD
GFGGLRLSETCRPLLRGEVSLQLRREPKPAQAAKASSSAASQLVRGHEREMWEALRSLRR
KLAEEHSVPPYVIFPDATLLEMLRSQPSSLSEMAEVSGVGARKLERYGQAFLEVLNGSGA
NDTPAPVADLRHELVSLARAGMTPAQVAGQLNCSEKNVYSLLAEAIAQQQLTLEQALDLP
EELLGEIQETFLDGEGELPAVSEVAPLFAGRVDEAVLYCVRAALQAEFEI
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccacgccatgcgcattctcaaagacgttttcggctacgacgcctttcgcggc
aaccaggccgcgatcatcgagcgcgtggccggcggcggcgatgccctggtgttgatgcct
accggcggcggcaagtcgctgtgctttcaggtgccggcactgatgcgcgagggcctggca
gtggtggtttcaccgttgatcgcgctgatggacgatcaggtggccaccctcgacgagttg
ggtgtggcagccgtggcgctgaactccaccttgagccctgacgagcagcgcgagattgcc
gatcgtatccgtcgcgggcagatcaagatgctctacctggcgcccgagcgtctggtgcag
ccgcgcatgctgagcttcctgcagggcctggacattgccctgtttgccatcgacgaagcg
cattgcgtgtcgcagtggggccatgatttccggcctgagtacctgcagctcggtcagctg
gctgagctctttccacatgtgccgcgcatcgccctgaccgccaccgcggataaacgtacc
cgtgaggaaatcgtccagcgtctgcacctggacaacgccgagcgctttctgtcgagcttc
gaccggccgaacatcttctatcgcatccagcccaaggatcagccgcgcaagcaactgctg
ggttttctcgctgcgcgcaagggtgatgccggtatcgtttactgcctgtcgcgcaagaag
gtcgaggaggtcgccgagtttctcagcagccagggcttcccagctctgccttatcacgcc
ggcttgcccaacgagttgcgtgccttcaatcagaagcgctttctcaatgaggaaggcctg
atcatggtggcgaccatcgccttcggcatgggtatcgacaagcccaacgtgcgtttcgtc
tgtcacctggatctgcccaagtcgctggaggcctactaccaggagaccggtcgcgccggt
cgtgacggactgccggccgatgcctggatggcttacggcctgcaggatgtgatcttcctc
aagcagatgctcaacaattccgaaggtgacgagcgccacaagcgcatcgagcagcacaag
ctcgacgccatgctcgccctgtgcgaggagacacgctgccgccgtcaggcgctgctggtc
tacttcgatgaagaactgcccaacccttgtgggcactgcgacaactgcatcgatggcgtc
gagacctgggatgccaccgagccggcgcgccaggcgttgtcggctgtctatcgcagtggc
cagcgctatggcgtcggccatctggtggatattctgctcggccgtgacaacgagaagatt
cgcgccgctggtcatcagcatctggcggtgttcggtgtgggcaagggtttttccgaggtc
gagtggcgcaccctgttccgccagttggtcgcgcgcggcctggccgatgtcgatctggat
ggcttcggcggtctgcgtctgagtgagacctgcaggccgctgctgcgcggtgaggtcagc
ctgcaattgcgccgtgaacccaagccggcgcaggcggccaaggcctccagcagcgccgcc
agccagttggtgcgtggccatgaacgggaaatgtgggaggcgctgcgcagcctacgccgt
aagctggccgaggagcacagcgtaccgccttacgtgatcttccccgatgccacgctgctg
gagatgctacgcagccagcccagctcgctgagcgagatggccgaggtcagcggcgttggc
gcgcgcaagctggagcgctatggccaggcttttctggaagtgctcaatggcagcggcgcg
aatgacacgccggctccggtggccgatctgcgtcacgagctggtcagcctggcccgtgcc
ggcatgacgcccgcacaggtcgccggccagcttaactgcagcgagaagaacgtttacagc
ctgctggccgaggccattgcccagcaacaactgaccctggaacaggcgctggatcttcct
gaggaactgctgggcgagattcaggaaaccttcctcgacggcgagggcgagctgccggcc
gtgagtgaggtcgcgccgctgttcgccggtcgtgtcgatgaggccgtgctctactgcgtg
cgtgcggcgctgcaggccgagttcgagatctaa
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