Pseudomonas sp. LPH1: BHQ29_14805
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Entry
BHQ29_14805 CDS
T10175
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pslp Pseudomonas sp. LPH1
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslp03019
]
BHQ29_14805
Enzymes [BR:
pslp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BHQ29_14805
Messenger RNA biogenesis [BR:
pslp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BHQ29_14805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_25
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
NACHT
T2SSE
ABC_tran
AAA_23
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AQZ34425
LinkDB
All DBs
Position
complement(3260880..3264896)
Genome browser
AA seq
1338 aa
AA seq
DB search
MTDLATLQKKLDHVMIAERHRLRRQLHELQKHPDEAKLAQWLERFQASSDKVAARRSSIP
VMRYDDALPIAAKRDEIKAALEKSQVVVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQ
PRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDGTLIKLMTDGILLAETQHDRFLE
KYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFNDAPIIEV
SGRTYPVETWYRPLAAEVDEEGERLLDDLSIDQGILAALDEIAEHERSVGKRPGDVLVFL
PGEREIREAAEVLRKANLRFTEVLPLYARLTPAEQQKIFAPMAGRKIVLATNVAETSLTV
PGIRYVIDSGTARISRYSYRAKVQRLPIEPVSQASANQRKGRCGRVEPGICIRLYSEEDF
LGRPEFTDPEILRTNLAAVILQMLHLRLGSIEDFPFIEPPDGKAISDGFNLLQELSAVNR
ESQLTPIGRQLARLPIDPRLGRMVLEGAKQGSLEEILIVAAALSVQDPRERPMDRQQAAD
QAHAQWKDVDSDFAALINLWRGFEEKRQELGSNPLRTWCKKNFLNYMRLREWRDAHRQLV
LIARDLQLMGKGGQNRSEAQGEQTANAPQPTKDTRVNAIARQQAEASEAAVRAKNYAAVH
KAILAGLLSQIGQKTEEGDYLGARQRRFWIHPSSVIGRKKPNWIMAAELVETTKLFARMV
AKIEPDWIEPLAAHLVKKNHLEPHWEKKRGQVVAYEQVTLYGMIIVGRRPVHYGPIDPPV
AREMFIREGLVRGEINSRVRCLTANRQLLERLDELEAKSRRRDILADEETLFGYYEARIP
QDIYQAASFESWYKKGSAADAQLLIMREEDALARDAKEVTASQYPDTLRIGELQLPLSYH
FEPNHPRDGVTLRVPAPLLPQLQPERLEWLVPGLLEAKCIALVRGLPKALRKNFVPVPDF
VGAALGKLVFGQGSLPQALGQELLRMTGARVSDEAWAEAAESIENHLKMNIEVVDAQGKF
LGEGRDLAELTARFAEASQAALAIPQQSDKPKAVEAKAFAEVAEKAQQKIAGLSMTVYPA
LVEEAGVVKEGRFPTQAEADFQHRRALQRLLLQQLAEQAKFLRGKLPGLTELGLLYRDIG
RVEALVEDILLASLDACILEGEATLPRDGAALAQLAERKRGDWTAHAERIARQVLEVLKL
NHDLQKRFKGKIDLAQAMALNDIKQQLANLVYAGFVRETPGEWLKEIPRYLKAIEQRLDK
VGAQVQRDRVWTGELTGFWEQYKARAAKHAQEGKRDPQLTLYRWMLEEYRVSLFAQQLGT
KMAVSDKRLSKQWTLVEG
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctcgccacgctgcagaagaaactcgaccacgtcatgatcgccgagcgccat
cgcttgcgccggcagttgcatgagctgcagaagcatcccgatgaggccaagctggcgcag
tggctggagcgttttcaggcgtccagcgacaaggtggcggcgcggcgtagcagcatcccg
gtgatgcgctacgacgatgcgctgccgattgctgccaagcgtgatgagatcaaggccgcg
ctggagaagagccaggtggtggtgattgccggtgagaccggttcgggcaagaccacccag
ttgccgaagatctgcctggagatcggccggggtgtgcatggcctgattggccatacccag
ccgcgtcggctggcggcgcgtagtgtggcgacgcgggtggccgaggagatcggcacgccg
ctgggtgagctggtcggttatcaggtgcgtttcgaggatcagagcaaggacggcacgctg
atcaagctgatgaccgacggcattctgcttgccgaaacccagcacgaccgctttctggaa
aagtacgacacgatcatcgtcgacgaggcgcacgaacgcagcctcaatatcgacttcctg
ctcggttacctgaaaaccctgttgccgcgtcgcccggatctgaagctgatcatcacttcg
gcgaccatcgatctggagcgcttttccaagcatttcaacgacgcgccgatcatcgaggtg
tccggtcgcacctatccggtggaaacctggtatcgcccgctggccgccgaggtggatgag
gagggcgagcgcctgctcgatgacctgtccatcgaccagggcattctcgccgcgctggac
gagatcgccgagcacgagcgcagcgtgggcaagcgcccaggcgatgtgctggtgttcctg
cccggtgagcgcgagattcgcgaggcggccgaggtgctgcgcaaggccaacctgcgtttt
accgaggtgctgccgttgtatgcgcggctgacgcccgccgagcagcagaagattttcgcg
cccatggccgggcgcaagatcgtgctggccaccaacgtcgccgaaacctcgctgaccgtg
ccgggcatccgctacgtgatcgacagcggcacggcgcgcatcagccgctacagctaccgc
gccaaggtgcagcgcctgcccatcgagccggtgtcgcaggccagcgccaaccagcgcaag
ggccgttgcgggcgggtcgagccgggtatctgcattcgtttgtacagcgaggaggatttc
ctcgggcgcccggaatttaccgacccggagattctgcgtaccaacctggcggcggtgatc
ctgcagatgctgcacctgcgcctgggcagcatcgaggactttccctttatcgagccgcca
gacggcaaagccatcagcgacggcttcaacctgttgcaggagctgtcggcggtcaaccgc
gaaagccagctcacgcccatcggccggcaactggcacgcctgcccatcgacccgcgcctg
gggcgcatggtgctggaaggcgccaagcagggcagcctggaggaaatccttatcgtcgct
gccgcgctgtcggtgcaagatccgcgcgagcgaccgatggatcgccagcaggccgctgat
caggctcatgcgcagtggaaggatgtggactcggacttcgccgcgctgatcaacctgtgg
cgcggcttcgaggagaagcgccaggagctgggcagcaacccgctgcgtacctggtgcaag
aagaacttcctcaactacatgcgcctgcgcgaatggcgcgatgcgcaccggcagctggta
ctgatcgcccgtgatctgcagttgatgggcaagggcgggcagaaccgctcggaggcgcag
ggcgagcaaacggctaacgcgccgcagccgaccaaggacacccgcgtcaacgccatcgcc
cgtcagcaggccgaggccagtgaggcagcggtgcgggcgaagaactacgccgccgtgcac
aaggcgattctcgccggcctgctcagccagatcggccagaagaccgaggagggcgactac
ctcggcgcgcgccagcgacgtttctggattcacccctccagcgtgatcgggcgcaagaag
cccaactggatcatggccgccgagctggtggaaaccaccaagctgttcgcccgcatggtg
gcgaagatcgagccggactggatcgagccgctggccgcgcatctggtgaagaagaaccat
ctggaaccgcactgggagaagaagcgcggccaggtggtggcgtacgagcaggtcaccctg
tacggcatgattatcgttggtcgccgcccggtgcattacggccccatcgacccgccggtg
gcgcgcgagatgttcattcgcgagggcctggtgcgtggcgagatcaacagccgcgtgcgc
tgcctgaccgccaaccgccagttgctcgaacgcctcgacgagctggaggccaaatcgcgc
cgccgagatattctcgccgacgaggaaaccctgttcggctactacgaggcgcgtatcccg
caggacatctaccaggccgcgagcttcgagagttggtacaagaaaggcagcgccgccgac
gctcaactgctgatcatgcgcgaggaagatgccctggcccgcgatgccaaggaagtcacc
gcctcgcagtacccggacaccttgcgcatcggcgagctgcaactgccgctgagctatcac
ttcgagcccaatcatccgcgtgacggcgtgaccctgcgcgtgccggctccgctgttgccg
caactgcagcccgaacgcctggaatggctggtgccggggctgctggaggccaagtgcatt
gcgctggtgcgcggcctgcccaaggcgctgcgcaagaacttcgtgccggtgccggacttc
gtcggcgccgcgctaggcaagctggtattcggccagggctcgttgccgcaggcacttggt
caggagctgctgcgcatgactggcgcgcgggtatccgacgaggcctgggcggaagcggct
gaaagcatcgaaaaccacctgaagatgaacatcgaggtggtcgacgctcagggcaagttt
cttggcgaaggccgcgacctggccgagctgactgcgcgttttgccgaagccagccaggct
gcgttggccatcccgcagcagagcgataagccgaaagcggtggaggccaaggcctttgcc
gaagtggccgagaaggcgcagcagaagatcgccgggctttccatgaccgtctacccagcg
ttggtggaggaagcgggcgtggtcaaggaagggcgcttcccgacccaggccgaggccgac
ttccagcaccgccgtgcgctgcaacgcctgctgttgcagcaactggctgagcaagcgaag
ttcctgcgcggcaagctgccggggctgaccgagctgggtttgctgtatcgcgatatcggc
cgtgtcgaggcgttggtcgaggacattctgctggccagcctggatgcctgcatcctcgaa
ggcgaagccacgctgccacgcgacggtgcggccctggcgcaactggccgagcgcaagcgt
ggcgactggacggcgcatgccgaacgcatcgctcgccaggtgctggaagttctcaagctc
aaccatgacctgcagaaacgcttcaagggcaagatcgatctggcccaggccatggcgctc
aatgacatcaagcagcagttggccaatctggtctatgccggcttcgtgcgcgagacgccg
ggcgagtggctcaaggaaatcccgcgttatctgaaggccatcgagcagcgcctggacaag
gtcggcgcgcaggtacagcgcgaccgagtatggacgggcgaactcaccggcttctgggaa
cagtacaaggcgcgtgctgccaaacatgcccaggaaggcaagcgcgacccgcagctcacg
ctgtatcgctggatgctggaggagtaccgcgtgtcgctgttcgcccagcaactggggacg
aagatggcggtatcggacaagcgcctgagcaagcagtggacgctggttgaaggttga
DBGET
integrated database retrieval system
