Pseudomonas sp. LPH1: BHQ29_16390
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Entry
BHQ29_16390 CDS
T10175
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03030
DNA replication
pslp03430
Mismatch repair
pslp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BHQ29_16390
03430 Mismatch repair
BHQ29_16390
03440 Homologous recombination
BHQ29_16390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pslp03032
]
BHQ29_16390
03400 DNA repair and recombination proteins [BR:
pslp03400
]
BHQ29_16390
Enzymes [BR:
pslp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BHQ29_16390
DNA replication proteins [BR:
pslp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BHQ29_16390
DNA repair and recombination proteins [BR:
pslp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BHQ29_16390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
Motif
Other DBs
NCBI-ProteinID:
AQZ34696
LinkDB
All DBs
Position
complement(3587449..3588852)
Genome browser
AA seq
467 aa
AA seq
DB search
MVTAAFAPAATLQGRALAVVEVKTTGAHPARDAIWELAIIQVDAEGCVAERLHWLFEPGV
ALPSQLLSLSGLHPLELRGQPRIDSEAQAIADAICGRVLVGHNLRFSLAFLRRVLPDWKT
RRSAQLCTLRLARAALPELASAGFDALCAHFGITRFFRDRAVPDAEAVLTLARHLLQQVA
PTALGHQLRSAARPPLLAAERFAQLPERPGVYYFLGDGGAQLYVGKSRNLRRRVMSHFQN
DHRDRRSLQMVQQIRDVQVAITAGELGALLFESAEIKRLQPLYNRRLRKQRELLTWALAG
EPGDLHIELLQHQALSPGLRHAGLFRSRHHARQWLLEQARQRRLCLRVLGLEEGEGACFA
YQLGRCAGACCGEEPRRVHDTRLLASAERLQTQAWPWGGPVALVERDDRHGLTQWHVLDQ
WRHLGTVDRFERVEPLLTTRRGGFNLDTYHILLGHLRRHPNMEIVLL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ctggtgacggctgccttcgcaccggccgccacgttgcagggcagggccctggcagtcgtg
gaggtgaagaccaccggagcccacccggcacgtgatgccatctgggagctggcgatcatt
caggtcgatgctgagggttgtgtcgcagagcgcttgcactggctgttcgagcctggtgtc
gcgctgccctcgcagttgctcagcctgagtggattacatcccctggaattacgcggccag
ccacgcatcgatagcgaagcacaggcgatagccgacgctatttgcggccgcgtgctggtg
ggccataacctgcgcttcagtctggcgttcttgcgccgagtgctgcccgactggaagacg
cggcgctctgcgcagctgtgcaccctgcgcctggccagagcggcgctgccggagctggcg
agcgccggcttcgatgcgctttgcgcacattttggcatcacgcgtttcttccgcgatcgc
gccgtgccggatgccgaggccgtattgacgctggctcggcacctgctgcagcaggtcgcg
ccgacggcgctggggcatcagctgcgcagcgcggcgcggcccccgctgctggccgcggag
cgtttcgcccagttgccggaacgtccgggtgtttattacttcctgggcgacggtggtgcg
caactgtatgtgggcaagagccgcaatctgcgccgccgggtgatgtcgcactttcagaac
gatcatcgcgaccgccgcagcctgcagatggtgcagcagatccgcgatgtgcaagtggct
atcacggccggtgagctgggcgctctgctgttcgagtctgccgagatcaagcgtctgcag
cccttgtacaaccgtcgtctgcgcaagcagcgcgagctgttgacctgggcgctggcgggc
gagcctggcgatctgcacatcgagttgctccagcaccaggcgttgagcccagggctcagg
catgccgggttgttccgctcgcgtcatcacgcgcgccagtggctgttggagcaggcgcgg
cagcgacgcctgtgcctgcgtgtcctcggtctggaggagggcgaaggtgcctgcttcgcc
tatcagcttgggcgctgtgcgggggcctgctgtggcgaggagccgcgccgggtgcacgat
acgcggttgctcgccagcgccgagcgcctgcaaacccaggcctggccatggggcgggccg
gtcgcgctggtcgagcgcgatgaccggcacggcctgacccagtggcacgtgctcgatcaa
tggcgccacctaggcacggtagatcgtttcgagcgggtcgagccattactgaccacgcgc
cgtggcggcttcaacctcgacacctatcacatcctgctcggccacctgcgccgccacccg
aacatggagatcgtgctgctgtga
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