Pseudomonas sp. LPH1: BHQ29_20270
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Entry
BHQ29_20270 CDS
T10175
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHQ29_20270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslp03019
]
BHQ29_20270
Enzymes [BR:
pslp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BHQ29_20270
Messenger RNA biogenesis [BR:
pslp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHQ29_20270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AQZ35381
LinkDB
All DBs
Position
4454322..4456205
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AA seq
627 aa
AA seq
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MSFASLGLSEALVRAVESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDREQRHGPKQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLASSHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLLGFDASTVEAERPETREPRQPRGQKQAKAQNAQGGDKPKGERN
NGGRRDKGKDSGKDQKAKPQQQGQGQNRRGQQSRNQSRGAVPAIPPLPPDRDPEEFLDDE
IDNFGNRADYVPVQNKPQGRGRRSGGGSAGNGAAQGQGQRANSNNRQPRSNAGGNPGNPG
KNRRQGGQGRNGGGRGRPADGRITSLDRDELPRAEAAVRNPREKQPIIVHKGSRLDRFPS
AEQLDELSNSTRPRSEKPALLTRNREE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctctagtccgtgcggtcgaatccgccggc
tacacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctcatggtggcggcccagacgggtacaggtaagacgggcggtttcgccctgccgatcctc
gaacgcctgtttccgggcggtcatccggatcgcgaacaacgtcacggcccgaaacaaccg
cgcgtgctggtgctgacacccacccgcgaactggccgctcaggtgcatgagagcttcaag
gtctatgcccgcgatttgaaattcgtcagcgcctgcattttcggcggcgttggcatgaac
ccgcaggtccaggccctggccaagggtgtcgacgttctcgtggcctgccccggccgcctg
ctcgacctggccaatcagaaggccatcgatctgtcccatgtcgaaatcctcgtgctcgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggccaaa
ctgccggcacagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctggccggcaagctgctgcacaaccccgagcgcatcgaggtcacgccgccaaacaccacg
gtcgaacgcatcgaacagcgcgtgttccgcctggcctccagccacaaacgcgccctgctc
gcccacctgatcacccagggcgcctgggaacaggtattggtgttcacccgcaccaagcac
ggtgccaaccgcctggccgagtacctcgacaagcatggtctgccggctgccgcgatccat
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccaaccaggta
cgcatcctggtagccaccgatatcgccgcacgcggcctggatatcgaccagctgccgcat
gtggtcaacttcgagctgcccaacgtcgaggaagactacgttcaccgcatcggccgtact
ggccgtgccggccgtagcggcgaggccatctcgctggtcgcgccggacgaagagaagctg
ctgaaaagtatcgagcggatgaccaagcagaagatccccgacggcgatctgctgggcttc
gacgccagcaccgtcgaggccgagcgcccggaaacccgcgaaccgcgccagccgcgcggg
cagaagcaagccaaggcgcagaacgcccagggcggcgacaaacccaagggtgagcgcaac
aacggtgggcgcagagacaagggcaaggacagcggcaaggatcagaaagccaagccgcaa
caacagggtcagggccagaaccgtcgtggtcagcagtcgcgcaaccagagtcgtggcgca
gtgccggccattccacccttgcctccggatcgcgacccggaagagttcctcgacgacgaa
atcgataatttcggcaaccgtgccgattacgtaccagtgcagaacaagccacaaggtcgc
ggccgtcgctcaggcggtgggtcggctggcaatggcgctgctcagggccaaggccagaga
gccaacagcaacaacaggcagccccgcagcaacgctggcggcaacccaggcaaccccggc
aagaatcgtcgccaaggtggccaggggcgtaacggcggcggccgtggccgaccggcggac
ggtcgcatcacctcgctggatcgcgacgagctgccacgcgccgaagcggccgtgcgcaac
ccgcgcgaaaagcagccgatcatcgtgcacaagggctcgcgcctagatcgtttccccagc
gccgagcagctcgacgaactgagcaacagcactcgtccacgcagcgaaaagccggcgcta
ctgacgcgtaaccgcgaagagtaa
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